Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0390
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   0.54 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   0.72 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   0.72 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   1.3  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    26   1.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   2.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   3.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   5.1  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    23   8.8  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   8.8  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    23   8.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   8.8  

>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = +3

Query: 144 KSFKMISENFSVSGSNEDMPSKTQSTITL-----DRKDAVVE 254
           + FK+  E++S + SN+D+  K Q++  L     ++K+AVVE
Sbjct: 124 QEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVE 165


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -3

Query: 323 WKKAPMVDVLCSNVTVFKRIVVIFHNSIFSVERDR*LGF*WHVLIAAADTKIFR 162
           W+   +   LC N+ +F +    FH  +   E D        +LI+ A    F+
Sbjct: 701 WETRTVFQALCQNIDIFGKPTKKFHEQLLEFETDEKERADLQILISPAGAPDFK 754


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 223 IVDWVFDGMSSLLPLTLKFSEIILNDFSAVY 131
           IV   FD  +S +P+TLK    I   FS VY
Sbjct: 193 IVTIEFDSFNSNVPVTLKLQRQIFLSFSIVY 223


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 208 KPSQRSRSTEKMLLWKMTTILLNTVTLEHKTSTIGAFFHL 327
           K S RS  +   +L++ T +      L+H TSTI  FF L
Sbjct: 479 KVSTRSSMSPSSILFRKT-VFEKYCLLDHSTSTISLFFGL 517


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 141 EKSFKM--ISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHSDVR 290
           EK  K   +++N+S +G    + +K +ST+        ++N  +P EHS +R
Sbjct: 154 EKKLKQERLAQNYSENGETNALNTKNESTV------QNIKNSLHPNEHSFIR 199


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 1    LQEFGTRVREQNVFKYVKCVIRSLQIRLKPFNFMSEFLVYCDYNIRLRN 147
            L E  T + E+N+    K + R ++ R K  NF    + + +  IRL N
Sbjct: 1211 LDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHDEQFIRLVN 1259


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 163 EIILNDFSAVYCNHNTLET 107
           +IILND+SA +  HN + T
Sbjct: 146 QIILNDYSANHFLHNAVST 164


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 220 VDWVFDGMSSLLPLTLKFSEIILNDFSA 137
           V W F  ++ L PL   F  +++N+F A
Sbjct: 706 VGWWFRWIAYLDPLQFGFESLMINEFKA 733


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 302 DVLCSNVTVFKRIVVIFHNSI 240
           ++ C+  T+ KR++   HN+I
Sbjct: 227 NIRCTRCTIPKRVITSMHNNI 247


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 228 LDRKDAVVENDYNPFE-HSDVRT 293
           LDR   V E+DYN +E  SD +T
Sbjct: 12  LDRLRTVEEDDYNDWEGSSDTKT 34


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 KMISENFSVSGSNEDMPSKTQSTITLD 233
           KM   NF+V+  + +MP K +  I  D
Sbjct: 279 KMREANFTVTSMHGEMPQKERDAIMQD 305


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 108 LTHKIKRFESYLQ*TNNTFYVLKHVLLS 25
           L H++K FE++L    NT   L H+ L+
Sbjct: 51  LLHELKLFENFLWQRVNTEMSLNHINLT 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,004
Number of Sequences: 5004
Number of extensions: 22500
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)