Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0390
(328 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0546 + 29889861-29890182,29891057-29892798 29 1.1
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 28 2.0
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 28 2.0
10_06_0188 - 11603941-11604528 27 2.6
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 27 3.5
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 3.5
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096... 27 4.6
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 26 6.1
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 26 6.1
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409... 26 8.0
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 26 8.0
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 26 8.0
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 QYTAEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEH-SDVRTQD 299
Q + E S + S+N S+ S ++ SK S + R +V+ND P + +++ T+D
Sbjct: 428 QKSHEISGEKCSDNSSIVASEANIKSKADSELISGRDVEMVDNDIPPKDQTNNIATED 485
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 231 DRKDAVVENDYNPFEHSDVRTQDINHRSFLPP 326
D ++A +E + + EH D R + + HR +PP
Sbjct: 172 DEEEAEIEEEEDEDEHLDDRRRRLRHRPQVPP 203
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 174 SVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHR 311
S SGS ED+P QS D D +D N EH V+ + +N R
Sbjct: 563 SSSGSEEDVPQPEQSAYGGDCADDDGGSDGNE-EHRAVKRRKLNRR 607
>10_06_0188 - 11603941-11604528
Length = 195
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 222 SLTGFLMACPHCCR*H*NFPKSF 154
S F ACPHCC H ++P+ +
Sbjct: 11 SAAAFWTACPHCCYVH-SYPRHY 32
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 302 DVLCSNVTVFKRIVVIFHNSIFSVER 225
DVLCSN T + +V+ ++N S+ R
Sbjct: 519 DVLCSNGTTLETLVISYNNFTGSIPR 544
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 108 VSSVL*LQYTAEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPF--EHS 281
+ SV ++ T +++SE VS S E +P + +T D ++ND +H
Sbjct: 898 IESVQDMEDTEATEPELVSEQNIVSTSEESVPEENATTEEPAFHDREIQNDGAELTEQHD 957
Query: 282 DVRTQDINHRS 314
V+ +++ ++S
Sbjct: 958 SVKAEELPNQS 968
>01_04_0047 -
15408802-15409068,15409418-15409478,15409516-15409626,
15409707-15409958,15410044-15410270,15410971-15411230,
15411373-15412279,15412370-15412567
Length = 760
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 125 SQYTRNSLIKLKGLSRICNERITHFTY 45
SQ+T N + G ICN+ T +TY
Sbjct: 717 SQWTTNLNLSESGRKNICNDMYTTYTY 743
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 153 KMISENFSVSGSNEDMPSKTQSTITLDRKD 242
++++ NF VSGSN D S+ T TL+R D
Sbjct: 602 ELVTGNFGVSGSN-DAASEEWMTNTLNRID 630
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 132 YTAEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHSD--VRTQDIN 305
Y AEK+ + E F + + E + S + D + DY+ HSD V TQ N
Sbjct: 385 YRAEKNMVPLLEMFPLLQTKETLASAEELAPFKDFSSRMAAIDYSVCVHSDAFVTTQGGN 444
Query: 306 HRSFL 320
FL
Sbjct: 445 FPHFL 449
>05_07_0311 -
29139883-29140359,29140641-29140788,29140883-29140959,
29141227-29141387,29141785-29142803,29142905-29142996,
29143117-29143256,29143397-29143574
Length = 763
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 174 SVSGSNEDM-PSKTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHRSFLPP 326
SVS S+ P T + +K+A +N F+HSDV D + PP
Sbjct: 231 SVSSSDPGTSPYSASETNSTFKKEATKDN----FQHSDVNVSDSESEASTPP 278
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 153 KMISENFSVSGSNEDMPSKTQSTI 224
+M S NF+VS + DMP K + I
Sbjct: 289 RMRSNNFTVSAMHGDMPQKERDAI 312
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 153 KMISENFSVSGSNEDMPSKTQSTI 224
+M S NF+VS + DMP K + I
Sbjct: 289 RMRSNNFTVSAMHGDMPQKERDAI 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,928
Number of Sequences: 37544
Number of extensions: 124305
Number of successful extensions: 282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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