BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NRPG0390 (328 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.22 SB_18680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1 SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8 >SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1280 Score = 31.1 bits (67), Expect = 0.22 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = +3 Query: 207 KTQSTITLDRKDAVVENDYNPFEHSDVRTQ-----DINHRSFLPP 326 KT++ T + K AVV YNPFE D T D++ + PP Sbjct: 345 KTEAETTKNTKTAVVRPGYNPFEDEDEATSPPPLPDVSDKKQAPP 389 >SB_18680| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 148 Score = 27.9 bits (59), Expect = 2.1 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 172 LVSAAAMRTCHQKPSQRSRSTEKMLLWKMTTI-LLNTVTLE 291 L+S A TC ++ R R + +LW+ +I L++TV LE Sbjct: 50 LMSYGAFSTCEREERMRIRDKLRDILWQNYSIKLIDTVDLE 90 >SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 625 Score = 26.6 bits (56), Expect = 4.8 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 231 DRKDAVVENDYNPFEHSDVRTQDINHR 311 D D V+E +N ++ +D D+NHR Sbjct: 461 DLFDPVIEERHNGYKKTDKHVTDLNHR 487 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,652,876 Number of Sequences: 59808 Number of extensions: 159548 Number of successful extensions: 458 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 458 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 450550116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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