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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0390
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.22 
SB_18680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 207 KTQSTITLDRKDAVVENDYNPFEHSDVRTQ-----DINHRSFLPP 326
           KT++  T + K AVV   YNPFE  D  T      D++ +   PP
Sbjct: 345 KTEAETTKNTKTAVVRPGYNPFEDEDEATSPPPLPDVSDKKQAPP 389


>SB_18680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 LVSAAAMRTCHQKPSQRSRSTEKMLLWKMTTI-LLNTVTLE 291
           L+S  A  TC ++   R R   + +LW+  +I L++TV LE
Sbjct: 50  LMSYGAFSTCEREERMRIRDKLRDILWQNYSIKLIDTVDLE 90


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 DRKDAVVENDYNPFEHSDVRTQDINHR 311
           D  D V+E  +N ++ +D    D+NHR
Sbjct: 461 DLFDPVIEERHNGYKKTDKHVTDLNHR 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,652,876
Number of Sequences: 59808
Number of extensions: 159548
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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