Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0390
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00038-1|AAA50663.2|  279|Caenorhabditis elegans Hypothetical pr...    30   0.34 
AF099191-1|AAF78096.1|  279|Caenorhabditis elegans MMP-like prot...    30   0.34 
U40944-3|ABC71813.1|  111|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z69384-9|CAD89747.1|  497|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z69383-14|CAA93405.3|  497|Caenorhabditis elegans Hypothetical p...    26   5.6  
AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical...    26   5.6  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    26   7.4  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    26   7.4  
Z99273-3|CAB16478.1|  392|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U00038-1|AAA50663.2|  279|Caenorhabditis elegans Hypothetical
           protein T21D11.1 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 138 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHRSF 317
           A +S   I+E  + SGS E+      +   + +++ + E + +PF+ S   T   +  SF
Sbjct: 200 AIRSLFPINETDANSGSEENSEDPVTTVKPISKEEGIDEENNDPFDASSTTTSSSSPDSF 259

Query: 318 LP 323
            P
Sbjct: 260 FP 261


>AF099191-1|AAF78096.1|  279|Caenorhabditis elegans MMP-like protein
           protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 138 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHRSF 317
           A +S   I+E  + SGS E+      +   + +++ + E + +PF+ S   T   +  SF
Sbjct: 200 AIRSLFPINETDANSGSEENSEDPVTTVKPISKEEGIDEENNDPFDASSTTTSSSSPDSF 259

Query: 318 LP 323
            P
Sbjct: 260 FP 261


>U40944-3|ABC71813.1|  111|Caenorhabditis elegans Hypothetical
           protein PDB1.1c protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  VIRSLQIRLKPFNFMSEFLVYCDYNIRLRNHL 153
           V  SLQ++L+   F+    V+CDY      H+
Sbjct: 80  VAESLQVKLEKLPFVERAFVHCDYKFDGDEHV 111


>U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical
           protein PDB1.1b protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  VIRSLQIRLKPFNFMSEFLVYCDYNIRLRNHL 153
           V  SLQ++L+   F+    V+CDY      H+
Sbjct: 275 VAESLQVKLEKLPFVERAFVHCDYKFDGDEHV 306


>U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical
           protein PDB1.1a protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  VIRSLQIRLKPFNFMSEFLVYCDYNIRLRNHL 153
           V  SLQ++L+   F+    V+CDY      H+
Sbjct: 310 VAESLQVKLEKLPFVERAFVHCDYKFDGDEHV 341


>Z69384-9|CAD89747.1|  497|Caenorhabditis elegans Hypothetical
           protein F13E9.1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 222 ITLDRKDAVVENDYNPFEHSDVRTQDINHRSFLPP 326
           IT+D     VE  Y+ F+  DV       +SFLPP
Sbjct: 39  ITVDTYTWTVERRYSDFDAYDVHRFLDRKKSFLPP 73


>Z69383-14|CAA93405.3|  497|Caenorhabditis elegans Hypothetical
           protein F13E9.1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 222 ITLDRKDAVVENDYNPFEHSDVRTQDINHRSFLPP 326
           IT+D     VE  Y+ F+  DV       +SFLPP
Sbjct: 39  ITVDTYTWTVERRYSDFDAYDVHRFLDRKKSFLPP 73


>AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical
           protein Y73F8A.19 protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 16  TRVREQNVFKYVKCVIRSLQIRLKPFNFMSEFLVYCDYNIRLRNHLK*FRKILVSAAAMR 195
           T +  Q     ++ V+RSL   L+PFN  + +L Y  +  ++  H +      +S  A  
Sbjct: 324 TNMDYQQYSNDIEFVVRSLGDTLEPFNPTNSWLSY-GFGAKIPPHYRDSNNFCLSLDADA 382

Query: 196 TC 201
           TC
Sbjct: 383 TC 384


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
 Frame = +3

Query: 228  LDRKDAVVEN-----DYNPFEHSDVRTQ 296
            LD  DA+ E      DY+PFE+SD+ T+
Sbjct: 1591 LDLVDAIEEGNGELVDYSPFENSDIPTE 1618


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
 Frame = +3

Query: 228  LDRKDAVVEN-----DYNPFEHSDVRTQ 296
            LD  DA+ E      DY+PFE+SD+ T+
Sbjct: 1596 LDLVDAIEEGNGELVDYSPFENSDIPTE 1623


>Z99273-3|CAB16478.1|  392|Caenorhabditis elegans Hypothetical
           protein Y45F10C.3 protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 207 KTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHRSFL 320
           K+  T  + RK   V  +   FE++ + TQD++HR+ +
Sbjct: 313 KSDFTERMARKIRDVLTNSEHFEYAHIITQDLHHRTVI 350


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 55  CVIRSLQIRLKPFNFMSEFLVYCDYNIRLRNHLK 156
           C+I+ L  RL+ F     +   CDY+I    H K
Sbjct: 255 CLIKKLVDRLEAFPEAIYYCEKCDYHINTIGHAK 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,937
Number of Sequences: 27780
Number of extensions: 126231
Number of successful extensions: 403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)