Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0390
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.54 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   1.6  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   2.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   2.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   2.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   3.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   3.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   8.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 144 KSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDY 263
           K   +I+E+ S   + + + S TQ  IT  R+  +VEN Y
Sbjct: 85  KEVSIITEDSSRKQTIDPLSSNTQ--ITRKRRVGIVENQY 122


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 1   LQEFGTRVREQNVFKYVKCVIRSLQIRLKPFNFMSE-FLVYCDYNI 135
           L+  G   R +NV + +  ++    IRL+P NF  E  LV  D  I
Sbjct: 25  LENTGISDRLENVTQTISRILDGYDIRLRP-NFGGEPLLVGMDLTI 69


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  VREQNVFKYVKCVIRSLQIRLKPFNF 99
           V ++NV  YV+C+++   +  +  NF
Sbjct: 54  VEDENVQSYVECMMKKFNVVDENGNF 79


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 138 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHS 281
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+ S
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 138 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHS 281
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+ S
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 138 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHS 281
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+ S
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 AVVENDYNPFEHSDVRTQDINHR 311
           A VE+++ P EH +   +   HR
Sbjct: 20  APVEDEFEPLEHFENEERADRHR 42


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 AVVENDYNPFEHSDVRTQDINHR 311
           A VE+++ P EH +   +   HR
Sbjct: 20  APVEDEFEPLEHFENEERADRHR 42


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  VREQNVFKYVKCVIRSLQIRLKPFNF 99
           + ++NV  Y++C ++      K  NF
Sbjct: 54  IEDENVQLYIECAMKKFSFVDKDGNF 79


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 161 NHFK*FLSRIL*SQYTRNS 105
           NH K +L  I+ S Y RN+
Sbjct: 231 NHSKEYLVSIMFSHYDRNN 249


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 180 SGSNEDMPSKTQSTITLDRK 239
           +G N+D+P +T+     D+K
Sbjct: 310 TGMNDDIPPETEEEEENDKK 329


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 225 TLDRKDAVVENDYNPFEHSD 284
           T D+K + ++ D  P  H+D
Sbjct: 235 TTDKKGSAIDLDIGPPLHAD 254


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 175 LKFSEIILNDFSAVYCNHNT 116
           LK   IIL D   +   HNT
Sbjct: 211 LKELRIILEDIKHINTRHNT 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,427
Number of Sequences: 438
Number of extensions: 1421
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)