Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0390
         (328 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    27   2.2  
At2g11626.1 68415.m01251 hypothetical protein                          27   2.2  
At5g33340.1 68418.m03957 aspartyl protease family protein contai...    26   5.2  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    26   5.2  
At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    26   5.2  
At3g29265.1 68416.m03673 hypothetical protein                          25   9.0  
At3g15030.2 68416.m01902 TCP family transcription factor, putati...    25   9.0  
At3g15030.1 68416.m01901 TCP family transcription factor, putati...    25   9.0  
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327    25   9.0  
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li...    25   9.0  

>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 147 SFKMISENFSVSGSNEDMPSKTQSTI 224
           S KM S NF+VS  + DMP K +  I
Sbjct: 291 SEKMRSHNFTVSSMHGDMPQKERDAI 316


>At2g11626.1 68415.m01251 hypothetical protein
          Length = 242

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 214 WVFDGMSSLLPLTLKFSEIILNDF 143
           W     SS  PL LKF +++ NDF
Sbjct: 125 WSLFNPSSPFPLNLKFHQVLTNDF 148


>At5g33340.1 68418.m03957 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 437

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 186 SNEDMPSKTQSTITLDRKDAVVENDYNPFEHSDVRTQDINHRS 314
           SN +   K   T  L  +D+     YNP E S  R ++  HRS
Sbjct: 21  SNANAKPKLGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRS 63


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 237  KDAVVENDYNPFEHSDVRTQDIN 305
            +D V+EN+ +PFE    R   +N
Sbjct: 1170 RDPVIENEIDPFEEGTDRNHQVN 1192


>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 169 ILVSAAAMRTCHQKPSQRSRSTEKMLLWKMTT 264
           ++ SAA +RTCH  PS      +++  +  ++
Sbjct: 412 LIASAATIRTCHNLPSSFKSKDQRLYFFSSSS 443


>At3g29265.1 68416.m03673 hypothetical protein
          Length = 236

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 220 RSRSTEKMLLWKMTTILLNTVTLEH 294
           R     K +L+K  T+L++ VTL H
Sbjct: 186 RKEKKSKQILFKNVTVLVSDVTLRH 210


>At3g15030.2 68416.m01902 TCP family transcription factor, putative
           similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
          Length = 420

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 276 HSDVRTQDINHRSFLPP 326
           H  + T D+NH   LPP
Sbjct: 353 HQSISTDDLNHHHHLPP 369


>At3g15030.1 68416.m01901 TCP family transcription factor, putative
           similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
          Length = 420

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 276 HSDVRTQDINHRSFLPP 326
           H  + T D+NH   LPP
Sbjct: 353 HQSISTDDLNHHHHLPP 369


>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
          Length = 859

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 183 GSNEDMPSKTQSTITLDRKDAVVENDYN 266
           G NE    K + T+ L +K+ +  ND+N
Sbjct: 12  GGNETTTKKVKGTVVLMKKNVLDFNDFN 39


>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
           protein [Nicotiana tabacum] GI:1064931, A-type cyclin
           [Catharanthus roseus] GI:2190259; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 327

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 LDRKDAVVENDYNPFEHSDVRTQDINHR 311
           + +KD  + +D+NP + S V   +I H+
Sbjct: 2   VSKKDKQIHSDHNPQDASPVEWAEIRHK 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,509
Number of Sequences: 28952
Number of extensions: 108941
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)