Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0388
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YGS9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q5GQT9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_Q4YGS9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 54

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 267 ILFAVYST*LTVRFRERHLYTLFISIFSCFYYFAKFYL--NTWN 392
           +LF +Y     + F  + +Y LF+  FS F++F  ++L  N+WN
Sbjct: 6   VLFYLYIDHFLINFHLKCIYHLFLFSFSFFFFFRFYFLFDNSWN 49


>UniRef50_Q5GQT9 Cluster: Putative uncharacterized protein; n=1;
            Cyanophage phage S-PM2|Rep: Putative uncharacterized
            protein - Cyanophage phage S-PM2
          Length = 3048

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 228  TYCSCTKVHFTKEILFAVYST*LTVRFRERHLYTLFISIFSCFYYFAKFYLNTWNQIFTR 407
            T     K+ F+K+  FA Y+T   +R ++ + Y    S FS    F  F  +    IFT 
Sbjct: 1408 TQSGINKLEFSKDETFATYATNADIRIQKYYRYLFDTSHFSMNGIFLDFSASKSGNIFTE 1467

Query: 408  E 410
            E
Sbjct: 1468 E 1468


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,878,794
Number of Sequences: 1657284
Number of extensions: 13167312
Number of successful extensions: 25366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25359
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)