Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0388
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    30   0.27 
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   5.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   5.8  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
            Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 129  VMQGLLGK-FPKTKKVVHFETTNHCKL*QISGICTYCSCTKVHFTKEILFAVYST*LTVR 305
            ++Q LL   FP+ K V+  E TN+  + ++S   +  SC+K   +   +++ +++ +T  
Sbjct: 793  LLQELLSMGFPREKAVIALEATNY-DVNEVSDSDSKLSCSKYMCSFTFIYSDFTSNITNN 851

Query: 306  FRERHLYTLFISI 344
            +R R  Y    S+
Sbjct: 852  YRPRIYYLAQFSV 864


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 235 AVVPKFILLKKYCLLSTLPN*QFG 306
           ++VP++ LL  Y +L  +PN Q G
Sbjct: 268 SIVPEWYLLPFYAILRAIPNFQLG 291


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 147 GKFPKTKKVVHFETTNHCKL*QISGICTYCS-CTKVHFTKEI 269
           G  P  K+ ++   T  CK  QISG C Y S C   H  +E+
Sbjct: 317 GVAPNGKRALY--KTEPCKNWQISGTCRYGSKCQFAHGNQEL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,942
Number of Sequences: 5004
Number of extensions: 61033
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)