Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0388
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    29   4.6  
SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)          28   6.1  

>SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 198 CKL*QISGICTYCSCTKVHFTKEILFAVYST 290
           C L  +   C  CSCT++H+ +++ F    T
Sbjct: 247 CVLIYLMNFCVECSCTQIHWFRDMQFVFVLT 277


>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 585 ESHNVHTRYNVIKLILGNSIWMN--EGIPCNTLILPFNDQ*LIY 460
           E H V TR +V   I G  I      G+ C+T  +P NDQ   Y
Sbjct: 407 ERHCVRTRNSVCSNITGERICNKGWHGVNCDTYCMPRNDQNAAY 450


>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +2

Query: 491 ISVLQGIPSFIHMEFPRI-NLI-----TLYLVCTL*LSCSDALV 604
           + VL GIP FI  +FP I NL+     + + +CT+ LS  +A V
Sbjct: 155 VFVLPGIPEFIQKDFPIIENLLLHPDSSKFYLCTIFLSSDEAEV 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,925,066
Number of Sequences: 59808
Number of extensions: 437292
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)