Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0387
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 37 0.002
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.36
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 29 0.63
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 28 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.5
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.5
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 2.5
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 4.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 5.8
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 5.8
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 5.8
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 7.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 7.7
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 521 PTIQCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
P +C+NC GH +C C+ C Q GH C + +C C
Sbjct: 15 PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYAC 63
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLCS 375
+ C+ C +GH C +C+ CG+ GH C D C C+
Sbjct: 116 MNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCN 163
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 15/57 (26%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQC--------------RSKPRCFKCGQ-GHTGDTCNVEEDCVSC 387
+C+ C R GH C RS C+ CG GH C + C SC
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSC 140
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -2
Query: 467 RSKPRCFKCGQ-GHTGDTCNVEEDCVSC 387
R PRC+ CG+ GH C C +C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSICYNC 41
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.36
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
Frame = -2
Query: 461 KPRCFKCGQGHTGDTCNVEEDCVSCCLCSGLHFASSKKCPEYVRQTDIKVTMAENSLSYI 282
KP CG H D N D V L + + +K P +T I + + +
Sbjct: 287 KPTPTNCGLQHALDNINANTDFVQYVLHASIKHEDNKN-PTDASKTKI-IQPPSSYGTGS 344
Query: 281 EASKLHPPISKSFADIVSSLPT--KSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPPQHS 108
A K +PP++ + + +++P+ ++ + P +PS + ++ + + P T P +
Sbjct: 345 SAGKTNPPVNPTI-KVTAAIPSPLQNTNPAPSTFP-NPSVASPAFPNSSTSNPSTAPASA 402
Query: 107 KGFDHVAHESLVRDYNMPEPSNGCALPSSSN 15
S D +NG + SSSN
Sbjct: 403 SPLASTLKPSTAND------TNGSSSSSSSN 427
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.63
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 326 TDIKVTMAENSLSYIEASKLHPPISK--SF-ADIVSSLPTKSVPGGNTVLPGSPSSRTIS 156
T++K M S S+ + + LHPP+S+ SF AD VS S G +L G+ + ++
Sbjct: 162 TELKDVMHSMSDSHEQNNALHPPLSRTTSFVADNVSVGSFASSTSGLDILTGTSARESLD 221
Query: 155 YKK 147
K+
Sbjct: 222 AKE 224
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 293 LSYI--EASKLHPPISKSFADIVSSLPTKSVPGGNTVLPGS 177
L+Y+ E +LHPPI + LP VPG V+P +
Sbjct: 339 LNYVIQETLRLHPPIHSHMRKVKRDLP---VPGSKIVIPAN 376
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = -2
Query: 263 PPISKSFADIVSSLPTKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPPQHSKGFDHVA 87
PP SFA + S P L +P+ ++ ++ + + P+ P Q + +++A
Sbjct: 1520 PPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRSSPYA-PQEPVQKPQAINNIA 1577
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 260 PISK-SFADIVSSLP-TKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPP 117
P+S+ S+ S++P T+ +P V G+P S T V KP+ P
Sbjct: 390 PVSRFSYGQHTSNVPSTQKLPSNFRVTQGAPPSHTYGPPPPVQPKPKISP 439
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +1
Query: 469 HWTLVCPKRQQLKHW 513
HW L+CP R++++ W
Sbjct: 162 HWQLLCPDREKVQTW 176
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 428 TGDTCNVEEDCVSCCLCSGLHFASSKKCPEYVRQTDIK-VTMAENSLS 288
T D +V CVSCC GL +S Y Q+ IK + ++SLS
Sbjct: 441 TSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSSLS 488
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = -2
Query: 518 TIQCFNCCRFGHTKVQCRSKPR------CFKC-GQGHTGDTC 414
T +C NC GH +C S+PR C C HT TC
Sbjct: 124 TKKCMNCGLLGHIAARC-SEPRKRGPRVCRTCHTDTHTSSTC 164
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = -2
Query: 215 KSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPPQHSKGFDHVAHESLVRDYNMPEPSNGC 36
+S P ++ P PS +S + KP S F H + +S PS
Sbjct: 305 ESEPSKPSIAPSQPSKTNVS---AAYEKPAELSSSSVPFPHKSQDSATPANVETTPSTAT 361
Query: 35 ALPSSSNA 12
+ P S A
Sbjct: 362 SAPKKSTA 369
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -2
Query: 452 CFKCGQGHTGDTCNVEEDCVSCCLCSGLH 366
C CG C++ V C CSG+H
Sbjct: 730 CADCGSVKDVTWCSINIPVVLCIECSGIH 758
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = -2
Query: 542 PVKLYIYPTIQCFNC-----CRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDCVSCCLC 378
P++ P QC C R H K C S+ + KC T D + SC +
Sbjct: 32 PIRPKGRPISQCEKCRIARITRHLHVKCTCNSRKKGSKCSTSSTTDLDSSSASNSSCSIP 91
Query: 377 SGL 369
S +
Sbjct: 92 SSI 94
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 524 YPTIQCFNCCRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDCV 393
+ I+ +C R KV+C + C +C + T V E V
Sbjct: 10 HKNIRARSCLRCRRRKVKCDRQYPCSRCKESEESCTYGVNEQAV 53
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Frame = -2
Query: 485 HTKVQCRSKP------RCFKCGQG--HTGDTCNVEEDCVSCCLCSG 372
+ + C SKP R CG G G+ C+ EDC + C G
Sbjct: 298 YVSLSCLSKPSEKSVLRLGTCGNGIVEDGEECDCGEDCENNPCCDG 343
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 166 REDGEPGNTVFPPGTDLVGREDTISANDLEMGGC 267
R GE NTVF DL+ +DTI A + C
Sbjct: 579 RVTGEICNTVFSRTYDLIRHQDTIHAKTRPVFRC 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,990
Number of Sequences: 5004
Number of extensions: 68818
Number of successful extensions: 227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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