Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0387
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 40 0.002
11_06_0690 + 26303733-26306540 37 0.013
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 37 0.017
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 36 0.023
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 35 0.052
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 34 0.12
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 34 0.12
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 33 0.16
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 33 0.28
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 33 0.28
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 31 1.1
10_08_0379 - 17373533-17374147 30 1.5
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987... 30 1.5
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 30 1.5
02_05_0255 - 27184306-27184914,27185009-27185272 30 1.5
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 29 2.6
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492... 29 3.4
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998 29 4.5
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 29 4.5
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 7.9
06_01_0460 + 3276855-3277967 28 7.9
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 28 7.9
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 28 7.9
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCG-QGHTGDTCNVEED 399
+CF C GH K C P C++C GH C V+ D
Sbjct: 70 RCFRCLGLGHLKASCSQPPTCYRCWYPGHIERNCKVDID 108
>11_06_0690 + 26303733-26306540
Length = 935
Score = 37.1 bits (82), Expect = 0.013
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKC 441
+CF C GH K C+ PRC++C
Sbjct: 93 RCFCCLGLGHLKADCKGAPRCYRC 116
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKCG-QGHTGDTC 414
CFNC GH K C RC+ C GH C
Sbjct: 132 CFNCLGLGHQKSACPGSTRCYNCWYSGHIARNC 164
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLCSGLHFASSKKCPE 339
C NC + GH +C ++ C C + GH C E C + C SG H A ++CP+
Sbjct: 124 CSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEPVC-NLCNVSG-HLA--RECPK 177
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 524 YPTIQCFNCCRFGHTKVQCRSKPRCFKCG-QGHTGDTCNVEEDCVSC 387
+P C NC R GH C + C CG GH C+ ++ C +C
Sbjct: 36 FPNDLCNNCKRPGHFARDCPNVALCHACGLPGHIAAECSSKDLCWNC 82
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCN 411
C+NC GH C ++ C CG+ GH C+
Sbjct: 79 CWNCKEPGHMANSCPNEGICRNCGKSGHIARECS 112
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-------CFKCGQ-GHTGDTCNVEEDCVSC 387
C NC + GH +C + P C C + GH C E+ C +C
Sbjct: 98 CRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEKACNNC 146
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 35.1 bits (77), Expect = 0.052
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -2
Query: 302 ENSLSYIEASKLHPPISKSFADIVSSLPTKSVPG-GNTVLPGS---PSSRTISYKKTVFT 135
E+SLS EA K S S + + S P+++V G+ V GS P S I Y K T
Sbjct: 63 ESSLSISEADK-----SPSHSSMASPSPSRAVESTGSPVHRGSQLTPPSTKIHYMKAAGT 117
Query: 134 KPRTPPQHSKGFDHVAHESLVRDYNMPEP 48
KP T D V ES V + P P
Sbjct: 118 KPLTFTIDPSAADFVGQESPVSTFVPPPP 146
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 33.9 bits (74), Expect = 0.12
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -2
Query: 302 ENSLSYIEASKLHPPISKSFADIVSSLPTKSVPG-GNTVLPGS---PSSRTISYKKTVFT 135
E+SLS EA K S S + + S P++++ G+ V GS P S I Y K T
Sbjct: 63 ESSLSISEADK-----SPSHSSMASPSPSQALESTGSPVHRGSQLTPPSTKIHYMKAAGT 117
Query: 134 KPRTPPQHSKGFDHVAHESLVRDYNMPEP 48
KP T D V ES V + P P
Sbjct: 118 KPLTITIDPSAADFVGQESPVSTFVPPPP 146
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 500 CCRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDCVSC 387
CC F K C + C +CG+G C + DC SC
Sbjct: 173 CCHFCRQKKLC-GEEGCKRCGEGDLNQPCIGKTDCSSC 209
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = -2
Query: 509 CFNCCRFGHTKVQC---RSKPRCFKCGQ-GHTGDTC 414
CFNC GH V C + K CF CG GH C
Sbjct: 179 CFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKQC 214
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -2
Query: 518 TIQCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
T +CFNC GH C++ K +C++CG+ GH C
Sbjct: 101 TGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -2
Query: 518 TIQCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
T +CFNC GH C++ K +C++CG+ GH C
Sbjct: 148 TGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 186
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 458 PRCFKCGQGHTGDTCNVEEDCVSCCLCSGLHFASSKKCPEY 336
PRC C G D ++ C LC G + CPE+
Sbjct: 316 PRCSSCDGGEERDDIDMVMTCCGAVLCRGCAEVNPCGCPEW 356
>10_08_0379 - 17373533-17374147
Length = 204
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 170 SRTISYKKTVFTKPRTPPQHSKGFDHVAHESLVRDYNMPEPSNGCA 33
+R +SY+K KP P + D A+ +L ++MP P G A
Sbjct: 158 ARGVSYEKKKRKKPPHPSSAAAAHDDAANGALHHHHHMPPPPPGAA 203
>08_02_0929 +
22694917-22695072,22695399-22695781,22698637-22698769,
22698870-22699312,22699786-22699864
Length = 397
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 194 TVLPGSPSSRTISYKKTVFTKPRTPPQHSKGFDHVAHESL 75
T LP +P S S K+ + P TPP +S+ H H SL
Sbjct: 213 TPLPTTPKSEDESLKEDI---PATPPLNSERLPHTLHRSL 249
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTC 414
+CF C H CR RC+ C + GH C
Sbjct: 261 KCFRCFASDHQAAACRDPIRCYTCRRSGHISFRC 294
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 584 QVLPKRVFMCYNSMPVKLYIYPTIQCFNCCRFGHTKVQCRSKPR 453
++L + F C+ S I+C+ C R GH +C +K +
Sbjct: 256 EILHGKCFRCFASDHQAAACRDPIRCYTCRRSGHISFRCPNKSK 299
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 155 YKKTVFTKPRTPPQHSKGFDHVAHESLVRDYNMPEPSNGCALPSSSNA 12
+ KT T PR P + KGF E L + PE + P++S A
Sbjct: 181 HAKTEATLPRAPEEEKKGFLDKIKEKLPGGHKKPEDATAVPPPAASPA 228
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKP---------RCFKC-GQGHTGDTCNVEEDCV----SCCLCSG 372
C+NC GH+ +C KP CF C QGH C + + CC G
Sbjct: 122 CYNCGESGHSLSKC-PKPIENGGTKFASCFVCKQQGHLSKNCPENKHGIYPKGGCCKICG 180
Query: 371 LHFASSKKCPEYVRQ 327
+K CP RQ
Sbjct: 181 EVTHLAKHCPNRGRQ 195
>09_06_0234 -
21747724-21747839,21748027-21748096,21749157-21749294,
21749389-21749493,21750157-21750527,21750612-21750694,
21750803-21751063,21751425-21751606,21752539-21752649,
21752727-21752798,21752883-21753036,21753329-21753341,
21754015-21754084,21754409-21754485,21754582-21754640,
21755327-21755580
Length = 711
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 93 MIKTFTVLRRSSGFSEDCFFIRYC 164
M+ T + RR +GF+ED F R C
Sbjct: 291 MVSTLHIFRRVTGFTEDIIFSRNC 314
>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
Length = 375
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQCRSKPRCFKC-GQGHTGDTC 414
I+CF C R GH + C + + C GH C
Sbjct: 136 IKCFECGREGHHQATCPNPHLYYSCHNTGHISSHC 170
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 476 VQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLCSGLHFASSKKCP 342
V+ +K C KC + GH D C VE V C +C S KCP
Sbjct: 375 VKGAAKKVCSKCFEKGHVADDCVVE---VYCDICDSFDHV-SHKCP 416
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 311 TMAENSLSYIEASKLHPPISKSFADIV-SSLPTKSVPGGNTVLP 183
+++EN+ +SK+HP +S SF D V SL S G + P
Sbjct: 1117 SLSENTSDGRLSSKVHPLVSSSFDDSVDQSLAGSSKCNGKRIFP 1160
>06_01_0460 + 3276855-3277967
Length = 370
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Frame = -2
Query: 329 QTDIKVTMAENSLSYIEASKL--HPPISKSFADIVSSLPTKSVPGGNTVLPGSPSSRTIS 156
+TD++V + +E K+ H D LP VP +PGSP + +
Sbjct: 208 RTDLEVLKLSSLYQELEQGKVLDHGQYLAGDGDGYPLLPWLMVPFRGPAVPGSPEAEFNA 267
Query: 155 YKKTVFTKPRTPPQHSKGFDHVAHESLVRDYNMPEPSNGC 36
K R + KG+ +A +RD P + C
Sbjct: 268 AHDATCRKARRTVRSLKGWGAIAR---LRDEESPRAAVAC 304
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 170 SRTISYKKTVFTKPRTPPQHSKGFDHVAHESLVR 69
SR + + +T TPP H KG D ++ ES++R
Sbjct: 404 SRNVMHSPNGYT---TPPTHGKGSDQLSVESILR 434
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 416 CNVEEDCVSCCLCSGLHFASSKKC 345
C+ + C C C GL+ + SK C
Sbjct: 56 CSADSTCKDDCECRGLYMSCSKNC 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,169,622
Number of Sequences: 37544
Number of extensions: 444764
Number of successful extensions: 1274
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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