Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0387
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 40 0.006
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 40 0.006
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 40 0.006
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 40 0.006
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 40 0.006
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 40 0.006
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 40 0.006
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 40 0.006
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 40 0.006
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 40 0.006
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 40 0.006
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 37 0.077
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 36 0.10
AF147791-1|AAD55679.1| 957|Homo sapiens mucin 11 protein. 34 0.41
BC117190-1|AAI17191.1| 1529|Homo sapiens slit homolog 2 (Drosoph... 32 1.7
AF133270-1|AAD25539.1| 1525|Homo sapiens SLIT2 protein. 32 1.7
AF055585-1|AAD04309.1| 1521|Homo sapiens neurogenic extracellula... 32 1.7
AB017168-1|BAA35185.1| 1529|Homo sapiens Slit-2 protein protein. 32 1.7
X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for ... 32 2.2
M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein. 32 2.2
J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein. 32 2.2
BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein. 32 2.2
U66059-22|AAC80195.1| 115|Homo sapiens V_segment translation pr... 30 8.8
M64352-1|AAA61095.1| 141|Homo sapiens TCR protein. 30 8.8
M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein. 30 8.8
J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein. 30 8.8
D13084-1|BAA02396.1| 105|Homo sapiens T-cell receptor beta-chai... 30 8.8
BC008115-1|AAH08115.1| 436|Homo sapiens C1orf103 protein protein. 30 8.8
AY190122-1|AAO43631.1| 739|Homo sapiens receptor-interacting fa... 30 8.8
AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (forme... 30 8.8
AL360270-1|CAI17128.1| 769|Homo sapiens chromosome 1 open readi... 30 8.8
AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (forme... 30 8.8
AK002131-1|BAA92097.1| 343|Homo sapiens protein ( Homo sapiens ... 30 8.8
AF009660-11|AAC13350.1| 115|Homo sapiens V_segment translation ... 30 8.8
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 118 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 161
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 122
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 118 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 161
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 122
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 113 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 156
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 130 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 169
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 117
Score = 35.5 bits (78), Expect = 0.18
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 452 CFKCGQ-GHTGDTCNVEEDCVSCCLCS-GLHFASSKKCPEYVRQ 327
C++CG+ GH C+++ED +C C G H A K P+ R+
Sbjct: 47 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKRERE 90
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 112 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 155
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 129 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 168
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 68 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 116
Score = 31.5 bits (68), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 452 CFKCGQ-GHTGDTCNVEEDCVSCCLCS-GLHFASSKKCPEYVRQ 327
C++CG+ GH C+++ED +C C G H A K P+ R+
Sbjct: 47 CYRCGESGHLAKDCDLQED-EACYNCGRGGHIAKDCKEPKRERE 89
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 119 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 162
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 136 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 175
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 123
Score = 31.5 bits (68), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 452 CFKCGQ-GHTGDTCNVEEDCVSCCLCS-GLHFASSKKCPEYVRQ 327
C++CG+ GH C+++ED +C C G H A K P+ R+
Sbjct: 54 CYRCGESGHLAKDCDLQED-EACYNCGRGGHIAKDCKEPKRERE 96
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 119 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 162
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 136 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 175
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 123
Score = 31.5 bits (68), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 452 CFKCGQ-GHTGDTCNVEEDCVSCCLCS-GLHFASSKKCPEYVRQ 327
C++CG+ GH C+++ED +C C G H A K P+ R+
Sbjct: 54 CYRCGESGHLAKDCDLQED-EACYNCGRGGHIAKDCKEPKRERE 96
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 118 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 161
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 122
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 111 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 154
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 128 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 167
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 115
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 111 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 154
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 128 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 167
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 115
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 118 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 161
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 122
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSCCLC 378
+C++C FGH + C +K +C++CG+ GH C+ + V+C C
Sbjct: 108 KCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSE-VNCYRC 151
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 125 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 164
Score = 35.9 bits (79), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 64 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 112
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 36.7 bits (81), Expect = 0.077
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC--RSKPRCFKCGQ-GHTGDTCNVE 405
++C+ C GH + C S+ C++CG+ GH C +E
Sbjct: 12 VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 51
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 36.3 bits (80), Expect = 0.10
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPR-----CFKCGQ-GHTGDTCN--VEEDCVSC 387
C+NC R GH C+ R C+ CG+ GH C+ E+ C SC
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSC 115
Score = 34.3 bits (75), Expect = 0.41
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCN 411
+C++C + GH + C ++ +C++CG+ GH C+
Sbjct: 111 KCYSCGKLGHIQKDC-AQVKCYRCGEIGHVAINCS 144
>AF147791-1|AAD55679.1| 957|Homo sapiens mucin 11 protein.
Length = 957
Score = 34.3 bits (75), Expect = 0.41
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 269 LHPPISKSFADIVSSLPTKSVPGGN--TVLPGSPSSRTISYKKTVF-TKPRTP 120
L P S + + S P++ P T LPGSP++ ++S K T F T PR+P
Sbjct: 756 LSPARSTTSGLVGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSP 808
>BC117190-1|AAI17191.1| 1529|Homo sapiens slit homolog 2 (Drosophila)
protein.
Length = 1529
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 497 CRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDC 396
C+ G ++ +P C +C G+TGD+C+ E C
Sbjct: 1421 CKHGKCRLSGLGQPYC-ECSSGYTGDSCDREISC 1453
>AF133270-1|AAD25539.1| 1525|Homo sapiens SLIT2 protein.
Length = 1525
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 497 CRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDC 396
C+ G ++ +P C +C G+TGD+C+ E C
Sbjct: 1417 CKHGKCRLSGLGQPYC-ECSSGYTGDSCDREISC 1449
>AF055585-1|AAD04309.1| 1521|Homo sapiens neurogenic extracellular
slit protein Slit2 protein.
Length = 1521
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 497 CRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDC 396
C+ G ++ +P C +C G+TGD+C+ E C
Sbjct: 1413 CKHGKCRLSGLGQPYC-ECSSGYTGDSCDREISC 1445
>AB017168-1|BAA35185.1| 1529|Homo sapiens Slit-2 protein protein.
Length = 1529
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 497 CRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDC 396
C+ G ++ +P C +C G+TGD+C+ E C
Sbjct: 1421 CKHGKCRLSGLGQPYC-ECSSGYTGDSCDREISC 1453
>X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for
integrin beta-5 subunit. ).
Length = 799
Score = 31.9 bits (69), Expect = 2.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 557 CYNSMPVKLYIYPTIQC--FNCCRFGHTKVQCRSKPRCF----KCGQGHTGDTCNVEEDC 396
C+ S K+Y P +C F+C R + V C C KC G+ GD CN D
Sbjct: 535 CFESEFGKIY-GPFCECDNFSCAR--NKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDI 591
Query: 395 VSC 387
+C
Sbjct: 592 STC 594
>M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein.
Length = 796
Score = 31.9 bits (69), Expect = 2.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 557 CYNSMPVKLYIYPTIQC--FNCCRFGHTKVQCRSKPRCF----KCGQGHTGDTCNVEEDC 396
C+ S K+Y P +C F+C R + V C C KC G+ GD CN D
Sbjct: 535 CFESEFGKIY-GPFCECDNFSCAR--NKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDI 591
Query: 395 VSC 387
+C
Sbjct: 592 STC 594
>J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein.
Length = 799
Score = 31.9 bits (69), Expect = 2.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 557 CYNSMPVKLYIYPTIQC--FNCCRFGHTKVQCRSKPRCF----KCGQGHTGDTCNVEEDC 396
C+ S K+Y P +C F+C R + V C C KC G+ GD CN D
Sbjct: 535 CFESEFGKIY-GPFCECDNFSCAR--NKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDI 591
Query: 395 VSC 387
+C
Sbjct: 592 STC 594
>BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein.
Length = 799
Score = 31.9 bits (69), Expect = 2.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 557 CYNSMPVKLYIYPTIQC--FNCCRFGHTKVQCRSKPRCF----KCGQGHTGDTCNVEEDC 396
C+ S K+Y P +C F+C R + V C C KC G+ GD CN D
Sbjct: 535 CFESEFGKIY-GPFCECDNFSCAR--NKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDI 591
Query: 395 VSC 387
+C
Sbjct: 592 STC 594
>U66059-22|AAC80195.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 29.9 bits (64), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 ISVCLTYSGHFLLEAKCSPEHKQQDTQSSSTLQVSPVW 432
+++CL ++GH E SP HK +T TL W
Sbjct: 9 VALCLLWAGHRDAEITQSPRHKITETGRQVTLACHQTW 46
>M64352-1|AAA61095.1| 141|Homo sapiens TCR protein.
Length = 141
Score = 29.9 bits (64), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 ISVCLTYSGHFLLEAKCSPEHKQQDTQSSSTLQVSPVW 432
+++CL ++GH E SP HK +T TL W
Sbjct: 9 VALCLLWAGHRDAEITQSPRHKITETGRQVTLACHQTW 46
>M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein.
Length = 1609
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 458 PRCFKCGQGHTGD-TCNVEEDCVSCCLCSGLHFASSKKCPEYV 333
P C KC G+ GD T DC C G A K E V
Sbjct: 749 PHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVV 791
>J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein.
Length = 1609
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 458 PRCFKCGQGHTGD-TCNVEEDCVSCCLCSGLHFASSKKCPEYV 333
P C KC G+ GD T DC C G A K E V
Sbjct: 749 PHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVV 791
>D13084-1|BAA02396.1| 105|Homo sapiens T-cell receptor beta-chain V
region protein.
Length = 105
Score = 29.9 bits (64), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 ISVCLTYSGHFLLEAKCSPEHKQQDTQSSSTLQVSPVW 432
+++CL ++GH E SP HK +T TL W
Sbjct: 1 VALCLLWAGHRDAEITQSPRHKITETGRQVTLACHQTW 38
>BC008115-1|AAH08115.1| 436|Homo sapiens C1orf103 protein protein.
Length = 436
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 371 LHFASSKKCPEYVRQTDIKVTMAENSLSYIEASKLHPPISKSFADIVSSLPTKSVPGGNT 192
L SS E R+ + + +A++ S +E L S A++ + P +T
Sbjct: 63 LQTVSSSPVTEISREV-VNIVLAKSKSSQMETKSLSNTQLASMANLRAEKNKVEKPSPST 121
Query: 191 VLPG-SPSSRTISYKKTVFTKPRTPPQHSKG 102
P + SS + KT+FT P P S G
Sbjct: 122 TNPHMNQSSNYLKQSKTLFTNPIFPVGFSTG 152
>AY190122-1|AAO43631.1| 739|Homo sapiens receptor-interacting
factor 1 protein.
Length = 739
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 371 LHFASSKKCPEYVRQTDIKVTMAENSLSYIEASKLHPPISKSFADIVSSLPTKSVPGGNT 192
L SS E R+ + + +A++ S +E L S A++ + P +T
Sbjct: 366 LQTVSSSPVTEISREV-VNIVLAKSKSSQMETKSLSNTQLASMANLRAEKNKVEKPSPST 424
Query: 191 VLPG-SPSSRTISYKKTVFTKPRTPPQHSKG 102
P + SS + KT+FT P P S G
Sbjct: 425 TNPHMNQSSNYLKQSKTLFTNPIFPVGFSTG 455
>AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 458 PRCFKCGQGHTGD-TCNVEEDCVSCCLCSGLHFASSKKCPEYV 333
P C KC G+ GD T DC C G A K E V
Sbjct: 749 PHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVV 791
>AL360270-1|CAI17128.1| 769|Homo sapiens chromosome 1 open reading
frame 103 protein.
Length = 769
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 371 LHFASSKKCPEYVRQTDIKVTMAENSLSYIEASKLHPPISKSFADIVSSLPTKSVPGGNT 192
L SS E R+ + + +A++ S +E L S A++ + P +T
Sbjct: 396 LQTVSSSPVTEISREV-VNIVLAKSKSSQMETKSLSNTQLASMANLRAEKNKVEKPSPST 454
Query: 191 VLPG-SPSSRTISYKKTVFTKPRTPPQHSKG 102
P + SS + KT+FT P P S G
Sbjct: 455 TNPHMNQSSNYLKQSKTLFTNPIFPVGFSTG 485
>AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 458 PRCFKCGQGHTGD-TCNVEEDCVSCCLCSGLHFASSKKCPEYV 333
P C KC G+ GD T DC C G A K E V
Sbjct: 749 PHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVV 791
>AK002131-1|BAA92097.1| 343|Homo sapiens protein ( Homo sapiens
cDNA FLJ11269 fis, clone PLACE1009190. ).
Length = 343
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 371 LHFASSKKCPEYVRQTDIKVTMAENSLSYIEASKLHPPISKSFADIVSSLPTKSVPGGNT 192
L SS E R+ + + +A++ S +E L S A++ + P +T
Sbjct: 63 LQTVSSSPVTEISREV-VNIVLAKSKSSQMETKSLSNTQLASMANLRAEKNKVEKPSPST 121
Query: 191 VLPG-SPSSRTISYKKTVFTKPRTPPQHSKG 102
P + SS + KT+FT P P S G
Sbjct: 122 TNPHMNQSSNYLKQSKTLFTNPIFPVGFSTG 152
>AF009660-11|AAC13350.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 29.9 bits (64), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 ISVCLTYSGHFLLEAKCSPEHKQQDTQSSSTLQVSPVW 432
+++CL ++GH E SP HK +T TL W
Sbjct: 9 VALCLLWAGHRDAEITQSPRHKITETGRQVTLACHQTW 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,456,700
Number of Sequences: 237096
Number of extensions: 2643231
Number of successful extensions: 11697
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 11056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11688
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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