Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0387
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 40 0.002
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 35 0.044
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 33 0.23
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P... 31 0.71
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.71
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.71
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.71
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 31 0.71
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.71
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 27 1.7
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 29 2.9
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P... 29 3.8
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 5.0
At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model... 28 5.0
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 28 5.0
At1g32190.1 68414.m03959 expressed protein 28 5.0
At1g13530.1 68414.m01586 expressed protein ; expression support... 28 5.0
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 28 6.6
At2g24860.1 68415.m02973 chaperone protein dnaJ-related similar ... 28 6.6
At5g51730.1 68418.m06415 expressed protein 27 8.8
At5g40900.1 68418.m04966 expressed protein similar to GI:2827651... 27 8.8
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 27 8.8
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 27 8.8
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 27 8.8
At2g18120.1 68415.m02109 lateral root primordium (LRP) protein-r... 27 8.8
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCNVEEDCVSC 387
C NC GH +C ++ RC+ C + GH C+ E C SC
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSC 117
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKCG-QGHTGDTCNVEEDCVSC 387
C NC R GH C + C CG GH C E C +C
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNC 98
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 509 CFNCCRFGHTKVQCRSKPRCFKC-GQGHTGDTCNVEEDCVSCCLCSGLHFASSKKCPE 339
C NC + GH C + C C GH C + C + C SG H A + CP+
Sbjct: 140 CNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVC-NICSISG-HVA--RHCPK 193
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRSKPRCFKCGQ-GHTGDTCN 411
+C+NC GH C ++ C CG+ GH C+
Sbjct: 94 RCWNCREPGHVASNCSNEGICHSCGKSGHRARDCS 128
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQC-----RSKPRCFKCGQ-GHTGDTCNVEEDCVSC 387
+ C++C GHT C R KP CF CG H C+ DC C
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRKP-CFICGSLEHGAKQCSKGHDCYIC 213
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQCRSKP--------RCFKCGQ-GHTGDTC 414
+QC+ C FGH C +P C++CGQ GH+G C
Sbjct: 261 VQCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = -2
Query: 518 TIQCFNCCRFGHTKVQC------RSKPRCFKCG-QGHTGDTCN 411
T+ C+ C + GHT + C P CF CG +GH C+
Sbjct: 76 TVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCH 118
>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 944
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -2
Query: 278 ASKLHPPISKSFADIVSSLPTKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPPQHSKGF 99
+ +LH S FAD+ + +KS + V P ++S K + F + PP S+
Sbjct: 489 SQQLHLLRSNLFADMEKLVESKSASFKSGVRPSRKVKTSLSKKPSPFVSKKPPPSDSRKR 548
Query: 98 DHVAHESLVRD 66
V +SL D
Sbjct: 549 QRVEVQSLSPD 559
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
+CFNC GH C + K +C++CG+ GH C
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
+CFNC GH C + K +C++CG+ GH C
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
+CFNC GH C + K +C++CG+ GH C
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
+CFNC GH C + K +C++CG+ GH C
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 512 QCFNCCRFGHTKVQCRS---KPRCFKCGQ-GHTGDTC 414
+CFNC GH C + K +C++CG+ GH C
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 26.6 bits (56), Expect(2) = 1.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 221 PTKSVPGGNTVLPGSPSSR 165
P S PGGN +PGSP R
Sbjct: 80 PFPSSPGGNPGIPGSPGFR 98
Score = 21.8 bits (44), Expect(2) = 1.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 257 ISKSFADIVSSLPTKSVPG 201
+S F+ + SS PT +PG
Sbjct: 53 VSDPFSSLQSSPPTSPIPG 71
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -3
Query: 310 QWQRIAYPILKRQNYIPPFLNHLLILYPLSQLNLFLVEIQYCLVHHP 170
+W ++Y + + + +L + + PLS + +L +I Y +VH P
Sbjct: 48 EWIAVSYLYKHQHSGVRDYLCNRMYTLPLSGIESYLFQICYLMVHKP 94
>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28170, At1g35110,
At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
At2g10350
Length = 1043
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 263 PPISKSFADIVSSLPTKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTPPQHSKGF 99
P +S++ +V+ L +KS G +LP S ++ T+ P T S G+
Sbjct: 804 PTLSEAEVFLVAELLSKSKTGSYELLPSMSKSEFALFRNTLSAAPNTEHLTSSGY 858
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 365 FASSKKCPEYVRQTDIKVTMAENSLSYIEASKLHPPISKSFADIVSSLPTKSVPGGN-TV 189
F + Y R ++T A N L + + L PP+ +D S+ P VP N T
Sbjct: 183 FTKDEIISAYTRSRVQQITGATNILQHHSGNMLPPPLDAYCSDSSSAKPIIKVPSTNATS 242
Query: 188 LPG-SPSS 168
+P SP S
Sbjct: 243 VPRYSPPS 250
>At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model
reflects the alignment of a full-length cDNA sequence
gi:18496702. There are multiple frame shifts in the
gene model resulting in a truncated protein. The
alternate model includes modifications in exons 14, 17
and 29 to compensate for frame shifts and maximize the
protein length. It is not based on EST data. adapter
protein SPIKE1 [Arabidopsis thaliana] GI:18496703
Length = 1757
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -2
Query: 650 KVMINNTPTWKPSQTVVFTF---DGQV---LPKRVFMCYNSMPVKLYIY 522
++ ++ TW PS ++FTF D Q P+ V + Y S+P+ YI+
Sbjct: 531 EIKVSLPATWTPSHHLLFTFFHVDLQTKLEAPRPVVVGYASLPLSTYIH 579
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 227 SLPTKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTP 120
S+P+ SVP + P P+ S T T PRTP
Sbjct: 53 SIPSPSVPTPSVPTPSVPTPSVPSPNPTPVTPPRTP 88
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 503 NCCRFGHTKVQCRSKPRCFKCGQGHTGDTCNVEEDCVSCCLCSG 372
+CC C KP+C KC C E C S C CSG
Sbjct: 351 SCCCPTFKCSSCFGKPKCPKCSCWKCLK-CPDTECCRSSCCCSG 393
>At1g13530.1 68414.m01586 expressed protein ; expression supported
by MPSS
Length = 385
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = -2
Query: 431 HTGDTC--NVEEDCVSCCLC 378
H G+ C EED VSCCLC
Sbjct: 105 HAGEACVSAKEEDKVSCCLC 124
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 530 YIYPTIQCFNCCRFGHTKVQCRSKP 456
Y P +C NC R+GH +C SKP
Sbjct: 308 YPRPPPKCLNCGRYGHLLSRC-SKP 331
>At2g24860.1 68415.m02973 chaperone protein dnaJ-related similar to
Tsi1-interacting protein TSIP1 (GI:4337001) [Nicotiana
tabacum]
Length = 144
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -2
Query: 515 IQCFNCCRFGHTKVQCRSKPRCFKCGQGHTGDT--CNVEEDCVSCCLCSGLHFASSKKC 345
+ C +C GH V+C+ C G GD C V SC +CSG AS C
Sbjct: 74 VGCSSCNSKGH--VECKW---CAGTGFFILGDNMLCQVPSRNTSCVICSGQGSASCSDC 127
>At5g51730.1 68418.m06415 expressed protein
Length = 412
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 214 LVGREDTISANDLEMGGCNFD 276
L G ED + N +MGGCN +
Sbjct: 246 LQGTEDALKLNGSDMGGCNLE 266
>At5g40900.1 68418.m04966 expressed protein similar to GI:2827651,
GI:7527728, GI:4406788,GI:6063544, GI:10764853 from
[Arabidopsis thaliana]; expression supported by MPSS
Length = 248
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 253 LNHLLILYPLSQLNLFLVEIQYCLVHHPHV---QYLIKKQSSLNPELLL 116
LNHL+++ Q ++YCL HPH +Y KK SL P+ L+
Sbjct: 30 LNHLIVVALDDQA------LRYCLRAHPHCYLHRYSRKKSESLKPDGLV 72
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 224 LPTKSVPGGNTVLPGSPSSRTISYKKTVFTKPRTP 120
+PT SVP + P PS S T PRTP
Sbjct: 59 VPTPSVPSPSVPTPSVPSPSVPSPNPTPVIPPRTP 93
>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 470 CRSKPRCFKC-GQGHTGDTCNVEEDCVSCCL 381
C K F C G CN E CVSCCL
Sbjct: 70 CPWKGERFSCHGCNILSQCCNSYEFCVSCCL 100
>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 470 CRSKPRCFKC-GQGHTGDTCNVEEDCVSCCL 381
C K F C G CN E CVSCCL
Sbjct: 70 CPWKGERFSCHGCNILSQCCNSYEFCVSCCL 100
>At2g18120.1 68415.m02109 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 222
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 452 CFKCG-QGHTGDTCNVEEDCVSCCLCSGLHFASSKKCPEYVRQTDIKVTMAENSLSYIEA 276
C +CG Q G T C +CC +GLH CP +VR T I + ++
Sbjct: 72 CQECGNQAKKGCT---HGRCRTCCKSNGLH------CPTHVRSTWIPIAKRRERQQQLQT 122
Query: 275 SKLHP 261
+P
Sbjct: 123 PTSNP 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,511
Number of Sequences: 28952
Number of extensions: 364610
Number of successful extensions: 1078
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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