Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0386
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   4.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   5.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.5  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 282 KWIAHWLFNNL--FNKLFDVTLR 344
           +W+AHW F  +    KL+D  LR
Sbjct: 255 QWLAHWAFAPIRWVAKLWDSGLR 277


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 533 EFYVLHTEISTVLLQSFVYMFQVCIHFVGAQPIH*APYKIVLDVHTSKHLHPTPLAS 363
           E  VL  E   VLL++ V        F    P++  PYKI+   H + +    P+ +
Sbjct: 396 EVTVLEIE-DWVLLKNKVTSDTRTHQFAKFMPLYSGPYKIIAKPHPNTYQIADPVTN 451


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 151 YRQTKVSCRHSTKRNDRRSSN 213
           +  T  SCR ST RN+R   N
Sbjct: 382 FSTTANSCRSSTFRNNRDEYN 402


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 378  WMKVFGSMNI*DNFVWSSMDWLCAYKM 458
            W++V  ++ +  NFV   +D  C Y +
Sbjct: 1536 WIQVSNNVKLGQNFVLLDLDPACWYHL 1562


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 254 CRWPDEPFEEMDSTLAVQQF 313
           C WPDE  ++  S+  V QF
Sbjct: 151 CSWPDEAKKKGCSSEEVFQF 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,467
Number of Sequences: 336
Number of extensions: 4242
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)