Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0386
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    38   0.002
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.48 
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   0.84 
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    29   0.84 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   1.9  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   1.9  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   3.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   4.5  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.9  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = +2

Query: 302 VQQFIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCT 481
           ++Q+ + T+    S +EA+ K+P+  D   W   +   F  ++N L   +   C   +C 
Sbjct: 26  LRQYAEATLGSG-SLMEAV-KLPKGEDLNEWIAMNTMDFYTQINMLYGTITEFCTAASCP 83

Query: 482 QMTATEQWIFLCAAHK---TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIK 634
           QM A   + +     K    P    A DY  + LD     L+  K FP+ + ++
Sbjct: 84  QMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGVE 137


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 521  AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRR 673
            A K PK   +IDYT +  D    LLN+ K   S +   +   + +  + +R
Sbjct: 883  AEKLPKHSTSIDYTLYAKDDPLYLLNTTKALRSCILSTEERASNMKEIIQR 933


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 123
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 221 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 257


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 123
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 188 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 224


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 629 CSPCLESIYCYSTSKLLHLECAVC-NQW 549
           CS C+E I+C + ++  H+ C  C N W
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGW 283


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 173 VAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQ 322
           V  PP +  + V++LRR +   KAKD  ++P+E F   D    +   ++Q
Sbjct: 244 VGKPPFKAPNHVELLRRIQ---KAKDVIKFPEEAFIHPDIKTLICALLKQ 290


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 515 CAAHKTPKECPAIDYT--RHTLDGAACLLNSNKYFPSRVNIKDSSIAK 652
           C A  TP++   +D T     L GA C++N         NIK S I K
Sbjct: 345 CIAKLTPEQ-RLVDVTVSERALVGADCMVNEGTTIKDNSNIKKSIIGK 391


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 292 AIHFFKGFIRPATEVLGFGAGSIASEYLNSVG 197
           A+H +K   RP T+  G    S+  +YL   G
Sbjct: 92  AMHGYKVSFRPGTDHAGIATQSVVEKYLQKKG 123


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 468 GLHSFCRRTAN--PLSSIQN--CLRCSYFQTPSSNTSGIFKIASRFEGSRRIV 322
           G+ S  +R+AN  P +S  N   +  S+ +  S+++S  F + S F G+ R+V
Sbjct: 448 GIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,226
Number of Sequences: 5004
Number of extensions: 66829
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)