Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0386
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 37 0.013
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 35 0.053
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 33 0.28
08_02_0254 - 14879724-14880635 29 2.6
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 29 2.6
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 4.6
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 28 6.1
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 28 6.1
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = +2
Query: 344 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 520
NL +++P D W + F ++N L L C PE+C MTA ++ + A
Sbjct: 67 NLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWAD 126
Query: 521 --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 625
K P E A Y + +D L+ FP ++
Sbjct: 127 GVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQKL 163
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 35.1 bits (77), Expect = 0.053
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +2
Query: 344 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 520
NL +++P D W + F ++N L L C P TC M+A ++ + A
Sbjct: 858 NLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWAD 917
Query: 521 --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 625
K P E A Y + +D L+ FP ++
Sbjct: 918 GIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKL 954
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 250 VLGFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNV 137
+ GFG GS+ S G FW+ G I+ YTG +
Sbjct: 273 ITGFGMGSVMCVVFGSYGLAFWYGGKLIIEKGYTGGKI 310
>08_02_0254 - 14879724-14880635
Length = 303
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/55 (25%), Positives = 20/55 (36%)
Frame = +2
Query: 392 WKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAID 556
W Y++L QFC + +N C E ++ W C P ID
Sbjct: 224 WLYDNLNQFCGAATE-GIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMSEVID 277
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 233 GTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEV 376
G +A D RWP P+ + T + +Q R P +E + MP +
Sbjct: 341 GVQASDPVRWPQSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPNL 388
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 244 GFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNV 137
GFG GS+ + +S G W+ G ++ Y+G ++
Sbjct: 280 GFGMGSVFFIFFSSYGLAIWYGGKLVVSKGYSGGDI 315
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 159 NKSILSPFHQKK*PTEFKYSDAIDPAPKPRTSVAGLMNPLKKWI 290
+++ L+ FHQ + ++ ++ A +P +P + LKKW+
Sbjct: 412 DRTHLAEFHQIEGMSKLRFKPAYNPYTEPSMEIFSYHEGLKKWV 455
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 173 VAIPPKEMTDGVQILRRNRPGTKAKDFCRW 262
+A+PPKE G +++ + PGT A+ W
Sbjct: 364 IALPPKEAKAGTWVVQDDVPGTIARANSNW 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,859,697
Number of Sequences: 37544
Number of extensions: 410064
Number of successful extensions: 989
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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