Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0386
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_994| Best HMM Match : I-set (HMM E-Value=6e-15)                     51   1e-06
SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)          33   0.29 
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)                 31   0.88 
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             29   2.7  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   3.6  
SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)               29   4.7  
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)                28   6.2  
SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 28   8.2  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         28   8.2  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   28   8.2  

>SB_994| Best HMM Match : I-set (HMM E-Value=6e-15)
          Length = 189

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +2

Query: 311 FIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCM 424
           +IQQ IR +  N++AIL+ PE  DEGVWKYEHLR + M
Sbjct: 1   YIQQQIRCNCENVDAILESPEGQDEGVWKYEHLRCYGM 38


>SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)
          Length = 699

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 317 QQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTAT 496
           +QT++   S L  I  M E+ D  +W++ +  +  ME+ G      +EC PET  ++   
Sbjct: 311 KQTVQSKLSELRLIPGMCELFDNIIWQHTNANRGLMEIEG-----DHECTPETALKIQFL 365

Query: 497 EQWIFLCAAHK 529
                 C  H+
Sbjct: 366 RLVHSFCDRHE 376


>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
          Length = 1193

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 266 DEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEVLDE-GVWKYEHLRQF 418
           +E  ++ D  L    F+++ +R DP+ ++AIL+MP+  D+ GV +   L Q+
Sbjct: 531 EEAIQDHDKHLIA--FLERCLRVDPAKVKAILEMPDPTDKAGVQRLLGLAQY 580


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 476 CTQMTATEQWIFLCAAHKTPKECPAID 556
           CTQ+     W F+C  H     C A+D
Sbjct: 758 CTQVLVERLWHFMCTVHDWRLRCDAVD 784


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 212 FELRRSFLLVEWRQDTFVC 156
           F L  SF+LV WR  TFVC
Sbjct: 93  FSLSNSFVLVLWRSVTFVC 111


>SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)
          Length = 602

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 IRRDPSNLEAILKMPEVLDE-GVWKYEHLRQFCMELNGLAVRLQNECKP 469
           +R DP+ ++AIL+MP+  D+ GV +   L Q+   L+     L +E KP
Sbjct: 491 LRVDPAKVKAILEMPDPTDKAGVQRLLGLAQY---LSKFLPHLSDETKP 536


>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
          Length = 691

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 299 PMCYPFLQRVHQASDRSPWLWCRVDCVGVFELRR 198
           P    FL    + SDR P++ C++D    F L++
Sbjct: 176 PAIDTFLMEDEEDSDRHPYVQCKIDLYDCFRLKK 209


>SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 830

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +3

Query: 198 PTEFKYS---DAIDPAPKPRTSVAGLMNPLKKWIAHWLFNNLFNKLFD 332
           P EFK     +A   A +PR     L  PLKKW+   +   +F    D
Sbjct: 504 PIEFKLEMDPEATPVAQRPRNVAYYLQQPLKKWLDQGVEQGIFEPQTD 551


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 473 TCTQMTATEQWIFLCAAHKTPKECPA-IDYTRHT--LDGAACLLNSNKYF 613
           TC+ +++   +   CAA  T K C A +D    +   +GA+C+    +YF
Sbjct: 275 TCSPISSGSDYTCACAAGYTGKNCTADVDECSSSPCQNGASCIKKVGRYF 324


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 473 TCTQMTATEQWIFLCAAHKTPKECPA-IDYTRHT--LDGAACLLNSNKYF 613
           TC+ +++   +   CAA  T K C A +D    +   +GA+C+    +YF
Sbjct: 71  TCSPISSGSDYTCACAAGYTGKNCTADVDECSSSPCQNGASCIKKVGRYF 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,778
Number of Sequences: 59808
Number of extensions: 509841
Number of successful extensions: 1324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)