Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0386
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    39   0.003
At5g45550.1 68418.m05594 mob1/phocein family protein contains Pf...    38   0.006
At2g25740.1 68415.m03089 ATP-dependent protease La (LON) domain-...    30   1.3  
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg...    29   3.8  
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu...    28   6.7  

>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
            PF03637: Mob1/phocein family; contains Pfam F00560:
            Leucine Rich Repeats; contains TIGRFAMS profile
            TIGR01612: reticulocyte binding protein; hypothetical
            protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = +2

Query: 344  NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 520
            NL   +K+P   D   W   +   F  ++N L   L   C PE C+ MTA  ++ +  A 
Sbjct: 1230 NLREAVKLPPGEDLNEWLAVNTVDFFNQVNLLFGTLTEFCTPENCSTMTAGPKYEYRWAD 1289

Query: 521  --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 625
                K P E  A  Y  + +D     L+    FP ++
Sbjct: 1290 GVQIKKPIEVSAPKYVEYLMDWIETQLDDETIFPQKL 1326


>At5g45550.1 68418.m05594 mob1/phocein family protein contains Pfam
           profile: PF03637 Mob1/phocein family
          Length = 215

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = +2

Query: 344 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 520
           NL   +++P   D   W   +   F  ++N L   L   C P+ C  MTA  ++ +  A 
Sbjct: 40  NLREAVRLPPGEDANEWLAVNTVDFFNQVNLLYGTLTEFCTPDNCPTMTAGPKYEYRWAD 99

Query: 521 --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 625
               K P E  A  Y  + +D     L+    FP R+
Sbjct: 100 GVQIKKPIEVSAPKYVEYLMDWIETQLDDETLFPQRL 136


>At2g25740.1 68415.m03089 ATP-dependent protease La (LON)
           domain-containing protein low similarity to protease Lon
           [Pseudomonas fluorescens] GI:7644385; contains Pfam
           profile PF02190: ATP-dependent protease La (LON) domain
          Length = 547

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +2

Query: 260 WPDEPFEEMDSTLAVQQFIQ--QTIRRDPSNLEAILKMPEVLDEGVWKY----EHLRQFC 421
           WP   +   DS    Q+ +   + I   P N+EA +  P++L   +       E +RQ  
Sbjct: 361 WPFWAYRMFDSYYLAQRAVDLWKQIVGVP-NMEAFVNKPDILSFSIASKIPVSESIRQEL 419

Query: 422 MELNGLAVRLQNE 460
           +EL+G++ RLQ E
Sbjct: 420 LELDGVSYRLQRE 432


>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
           protease GI:13172275 from [Arabidopsis thaliana];
           identical to cDNA  DegP2 protease (DEGP2) nuclear gene
           for chloroplast product GI:13172274
          Length = 607

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 503 WIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSS 643
           W F+ A+  TP+    I       D  + +LN  K +P RV  + S+
Sbjct: 28  WCFVSASSLTPRASSNIKRKSSRSDSPSPILNPEKNYPGRVRDESSN 74


>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
           putative similar to multidrug-resistant protein CjMDR1
           GI:14715462 from [Coptis japonica]
          Length = 1273

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 244 GFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNVNKPLIVTTA 110
           G G G +   + +S     W+ G  IL   YTG +V   +I+  A
Sbjct: 272 GLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIIIVVA 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,365
Number of Sequences: 28952
Number of extensions: 339484
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)