Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0385
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   3.0  
SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    26   4.0  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    26   5.2  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 520 MCPVKTTTLSSYLKHF 473
           MCP+  TTLS +++HF
Sbjct: 460 MCPLCCTTLSKFVRHF 475


>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 118 EKPIFDYHEES--QTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXXXMSTSVFLMQ 291
           E P F   EES  ++EKL      +PF+ +G                    +  + F M+
Sbjct: 14  ELPTFPASEESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMANKF-MR 72

Query: 292 FRVIAQGTVVGALTAGMMY 348
           +RV++QG  + AL   +++
Sbjct: 73  YRVMSQGFTLAALAFSVLF 91


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  GNLGAYQPITSHKNVTRETDFRLS*RIAN 155
           G LG YQ    H  +TRE +F L+  ++N
Sbjct: 91  GYLGEYQEDIIHHLITREKNFLLNVHLSN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,576
Number of Sequences: 5004
Number of extensions: 36887
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)