Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0385
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    28   6.0  

>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 491 GKRRCLDGTHYFIKRMCSFKHFHRTGEIFNTNI 589
           G+R   D     IK +C F  F ++ ++FNT I
Sbjct: 185 GRREEWDRAEDLIKELCGFHEFQKSYQVFNTVI 217


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 386 FPLSLLKWFL*RVYIMPAVSA 324
           FP+    WFL R+Y +P VSA
Sbjct: 90  FPIEEHGWFLIRIYFLPLVSA 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,988
Number of Sequences: 28952
Number of extensions: 183623
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)