Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0384
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720...   167   5e-42
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369...   126   1e-29
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    28   7.5  
08_01_0917 + 9033451-9036136,9036373-9036722                           27   9.9  
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767...    27   9.9  

>09_04_0657 +
           19271266-19271388,19271906-19271910,19272005-19272067,
           19272150-19272256,19272321-19272418,19273070-19273162,
           19273279-19273320,19273464-19273619
          Length = 228

 Score =  167 bits (407), Expect = 5e-42
 Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%)
 Frame = +1

Query: 151 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 330
           A I PS+L++D + L  E+ +++  GAD+LH+D+MDG FVPNLT G PV++ LR   K A
Sbjct: 7   AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65

Query: 331 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD-VIEVCRKVREHGMKVGVAIKPGTP 507
           + + H+MV  P  ++ P+A AG + +TFHIE  +D   E+ + ++  GM+ GV+++PGTP
Sbjct: 66  YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125

Query: 508 VSEVEKYISIS---DMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
           V EV   +      ++VL+MTVEP FGGQKFM   M KV+ LR+ YP LDIE
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIE 177


>03_01_0485 +
           3695857-3695951,3696489-3696597,3696746-3696886,
           3696986-3697099,3697558-3697636,3698163-3698272,
           3698344-3698400,3698520-3698609
          Length = 264

 Score =  126 bits (305), Expect = 1e-29
 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 2/179 (1%)
 Frame = +1

Query: 97  KFFRRKIRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPN 276
           K FR +  S+         ++ PSIL+A+ S+L E+ + +   G D++H+DVMDG+FVPN
Sbjct: 33  KAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPN 92

Query: 277 LTFGHPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVC 450
           +T G  VV  LR  + D   + H+M+ +PEQ +     AG +  + H E    +      
Sbjct: 93  ITIGPLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTV 151

Query: 451 RKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLR 627
            +++  G K GV + P TP++ ++  + + D+VLIM+V P FGGQ F+E+Q+ K+  LR
Sbjct: 152 NQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELR 210


>04_03_1031 + 21850857-21851009,21852229-21852350,21852447-21852891,
            21852981-21853087,21853192-21854524,21854632-21854859,
            21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 157  IGPSILNADLSQLYEESQKLLDNGAD 234
            I P  L   +S+LY+   KLLDN AD
Sbjct: 972  IAPPELQNTISELYDALVKLLDNNAD 997


>08_01_0917 + 9033451-9036136,9036373-9036722
          Length = 1011

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 530 IYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 417
           IYF+  +  + G +  P F   S+ FL      L+GS+
Sbjct: 224 IYFNVKDNQLEGHVPLPIFNISSIRFLDLGFNRLSGSL 261


>01_06_1828 -
           40174446-40174543,40175031-40175171,40176518-40176719,
           40176815-40176914,40177029-40177081,40177951-40178097,
           40178184-40178341,40178509-40178599,40179415-40179522,
           40179815-40179952,40180154-40180246,40180342-40180434,
           40180528-40180637,40181087-40181135,40181324-40181437,
           40181530-40181589,40181674-40181742,40182034-40182135,
           40182235-40182263,40182348-40182630,40183574-40183960
          Length = 874

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 319 IKDAFFETHMMVEKPEQWITPMAD 390
           I+DAFF+  MM    ++ +TPM+D
Sbjct: 804 IRDAFFKRKMMTGVLDRCVTPMSD 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,520
Number of Sequences: 37544
Number of extensions: 273578
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)