Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0384
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   4e-27
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  29   2.5  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   3.3  
SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)                   28   5.8  

>SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score =  118 bits (284), Expect = 4e-27
 Identities = 74/166 (44%), Positives = 93/166 (56%)
 Frame = +1

Query: 157 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFF 336
           IGPSILN DLS L +E  +LL  GADYLHLDVMDG FVPNLTFG P+VKCLR K+ +AFF
Sbjct: 42  IGPSILNGDLSCLADECNRLLQCGADYLHLDVMDGHFVPNLTFGAPLVKCLRKKVPNAFF 101

Query: 337 ETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSE 516
           + HMMV  PE+        G+      I+P   V +V   V    M + + ++PG     
Sbjct: 102 DMHMMVANPEK-------VGIG-----IKPGTPVTDVLPYVEHVNMVLIMTVEPG----- 144

Query: 517 VEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
                              FGGQ FM + M K+++LR+ Y  LDIE
Sbjct: 145 -------------------FGGQSFMADMMPKIEFLRQKYRELDIE 171


>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +1

Query: 412 FHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPXFGGQKF 591
           F +EP+  +  +C K+  +  +V  A+   TP  E + ++ +   +L + +      Q  
Sbjct: 561 FRLEPLNLISRLCDKLEVNVKRVRSALDAPTPPKE-DAFVPMVTSILEVLISDCMKEQDR 619

Query: 592 MENQMAKVQYLRENYPLL 645
            EN++ K+Q  R    +L
Sbjct: 620 FENEILKLQGHRNRLDIL 637


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 208 QKLLDNGADYLHLDVMDGQFVPNLTFGHPVVK 303
           Q L+  G + +H+DV+DG    NL   HP  K
Sbjct: 401 QVLVVQGQNDIHVDVVDGSSEQNLINSHPTAK 432


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +1

Query: 415 HIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV--------LIMTVEP 570
           H+  VKD  ++C  V  + M  G     G  ++  E Y+ ++D           I  +  
Sbjct: 270 HLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPEPYVQVTDFTEDGKGFEQCIKILRL 329

Query: 571 XFGGQKFMENQMAKVQYLREN 633
             G   F  NQ+A +  +REN
Sbjct: 330 AVGKFSFCTNQIASLS-IREN 349


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 394 GVNQYT-FHIEPVKDVIEVCRKVREH-GMKVGVAIKPGTPVS 513
           G N YT  HI    D + +CRK+ EH G  V  A    TP+S
Sbjct: 221 GFNGYTPLHIAGQIDNVNICRKLVEHGGSVVAAADDKMTPLS 262


>SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
          Length = 298

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 504 SSRLYCNSYLHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHW---CYPLLWFLNHHVSFK 334
           +SR     +  + + NF A    +F    + C+++  S+      C+P  +F   HV+FK
Sbjct: 73  ASRFVGEWFYGASVCNFIAFIIVLFGSLTI-CLVVVMSVERLGAICFP--FFYKEHVTFK 129

Query: 333 KGIFYFS 313
           K +F  S
Sbjct: 130 KAVFLLS 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,536,016
Number of Sequences: 59808
Number of extensions: 329189
Number of successful extensions: 672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)