Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0384
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   201   3e-52
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    30   1.2  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  201 bits (491), Expect = 3e-52
 Identities = 98/174 (56%), Positives = 123/174 (70%), Gaps = 4/174 (2%)
 Frame = +1

Query: 145 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 321
           L+  + PSILNADL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHPVV+ LR  + 
Sbjct: 3   LRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLG 62

Query: 322 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD---VIEVCRKVREHGMKVGVAI 492
            + FF+ H+MV  P QW+ PMA AG +Q+TFH E V     V E+  K+R+ GMKVG+++
Sbjct: 63  AEPFFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSV 122

Query: 493 KPGTPVSEVEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
           KPGT V  + K+ +  D  LIMTVEP FGGQKFMEN M KV+ +R  YP L I+
Sbjct: 123 KPGTSVEHILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQ 176


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 557 IIKTMSDIEIYFSTSE-TGVPGFIATPTFIPCSLTFLH 447
           II +M  +EI FS    TG   F   P+FI  S+ FLH
Sbjct: 11  IITSMETVEIEFSAKVFTGFQLFYGVPSFIIMSVLFLH 48


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 391 AGVNQYTFHIEPVKDVIEVCRKVRE 465
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 391 AGVNQYTFHIEPVKDVIEVCRKVRE 465
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,490,022
Number of Sequences: 27780
Number of extensions: 264085
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)