Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0384
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosol... 168 2e-42
At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosol... 168 2e-42
At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosol... 165 2e-41
At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase, chlorop... 128 2e-30
At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase, chlorop... 128 2e-30
At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2 (... 37 0.010
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 34 0.095
At2g31530.1 68415.m03852 secY family protein low similarity to S... 33 0.22
At3g22350.1 68416.m02822 F-box family protein similar to F-box p... 29 3.6
At5g39570.1 68418.m04793 expressed protein 28 4.7
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 28 6.2
>At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 168 bits (409), Expect = 2e-42
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 4/170 (2%)
Frame = +1
Query: 157 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFF 336
I PS+L++D + L E+ +++D GA++LH+D+MDG FVPNLT G PV++ LR K +A+
Sbjct: 6 IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLR-KHTNAYL 64
Query: 337 ETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD-VIEVCRKVREHGMKVGVAIKPGTPVS 513
+ H+MV P ++ MA AG + +TFH+E +D ++ K++ GM+ GVA+KPGTPV
Sbjct: 65 DCHLMVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTPVE 124
Query: 514 EVEKYISIS---DMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
+V + + +MVL+MTVEP FGGQKFM + M KV+ LR+ YP LDI+
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPTLDIQ 174
>At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 168 bits (409), Expect = 2e-42
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 4/170 (2%)
Frame = +1
Query: 157 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFF 336
I PS+L++D + L E+ +++D GA++LH+D+MDG FVPNLT G PV++ LR K +A+
Sbjct: 6 IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLR-KHTNAYL 64
Query: 337 ETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD-VIEVCRKVREHGMKVGVAIKPGTPVS 513
+ H+MV P ++ MA AG + +TFH+E +D ++ K++ GM+ GVA+KPGTPV
Sbjct: 65 DCHLMVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTPVE 124
Query: 514 EVEKYISIS---DMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
+V + + +MVL+MTVEP FGGQKFM + M KV+ LR+ YP LDI+
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPTLDIQ 174
>At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 227
Score = 165 bits (402), Expect = 2e-41
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 4/170 (2%)
Frame = +1
Query: 157 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFF 336
I PS+L++D + L E+++++D GA++LH+D+MDG FV NLT G PV++ LR K +A+
Sbjct: 8 IAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLR-KHTNAYL 66
Query: 337 ETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD-VIEVCRKVREHGMKVGVAIKPGTPVS 513
+ H+MV P ++ MA AG + +TFH+E ++ E+ +K++ GM+ GVA+KPGTPV
Sbjct: 67 DCHLMVTNPMDYVDQMAKAGASGFTFHVEVAQENWQELVKKIKAAGMRPGVALKPGTPVE 126
Query: 514 EVEKYISIS---DMVLIMTVEPXFGGQKFMENQMAKVQYLRENYPLLDIE 654
+V + + +MVL+MTVEP FGGQKFM + M KV+ LR YP LDIE
Sbjct: 127 QVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRNKYPTLDIE 176
>At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase,
chloroplast, putative / pentose-5-phosphate 3-epimerase,
putative strong similarity to SP|Q43157
Ribulose-phosphate 3-epimerase, chloroplast precursor
(EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
(RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 281
Score = 128 bits (310), Expect = 2e-30
Identities = 64/176 (36%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Frame = +1
Query: 115 IRSKTKMTRHLKA--LIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFG 288
+++ +++ R K+ ++ PSIL+A+ ++L E+ + + G D++H+DVMDG+FVPN+T G
Sbjct: 44 VKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG 103
Query: 289 HPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVR 462
VV LR + D + H+M+ +PEQ + AG + + H E + +++
Sbjct: 104 PLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIK 162
Query: 463 EHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLRE 630
G K GV + PGTP+S +E + + D+VLIM+V P FGGQ F+E+Q+ K+ LR+
Sbjct: 163 SLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRK 218
>At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase,
chloroplast, putative / pentose-5-phosphate 3-epimerase,
putative strong similarity to SP|Q43157
Ribulose-phosphate 3-epimerase, chloroplast precursor
(EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
(RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 281
Score = 128 bits (310), Expect = 2e-30
Identities = 64/176 (36%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Frame = +1
Query: 115 IRSKTKMTRHLKA--LIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFG 288
+++ +++ R K+ ++ PSIL+A+ ++L E+ + + G D++H+DVMDG+FVPN+T G
Sbjct: 44 VKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG 103
Query: 289 HPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVR 462
VV LR + D + H+M+ +PEQ + AG + + H E + +++
Sbjct: 104 PLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIK 162
Query: 463 EHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLRE 630
G K GV + PGTP+S +E + + D+VLIM+V P FGGQ F+E+Q+ K+ LR+
Sbjct: 163 SLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRK 218
>At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2
(MTHFR2) identical to SP|O80585
Methylenetetrahydrofolate reductase (EC 1.5.1.20)
{Arabidopsis thaliana}
Length = 594
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 340 THMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIE 444
T+M V K EQW++ A A VN T+ + P K++I+
Sbjct: 493 TYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQ 527
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 33.9 bits (74), Expect = 0.095
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 340 THMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIE 444
T+M V K E W++ ++ VN T+ + P K+VI+
Sbjct: 493 TYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQ 527
>At2g31530.1 68415.m03852 secY family protein low similarity to
SP|P31159 Preprotein translocase secY subunit
{Synechococcus sp}; contains Pfam profile PF00344:
eubacterial secY protein
Length = 556
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 436 VIEVCRKVR--EHGMKVGVAIKPGTPVSEVEKYI 531
V E CRK++ +G K+ A + G+P++EVE YI
Sbjct: 347 VTEGCRKIKLQYYGFKLASASREGSPITEVEPYI 380
>At3g22350.1 68416.m02822 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 378
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 364 EQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISD 543
+QW T +Q FHI P + ++ + ++ R M + + + P P E + + I D
Sbjct: 29 KQWNTLFKKRSFSQKHFHIAPKESMVLMLKEYRVCSMNINLNVSP--PSVEFQGTLGIKD 86
>At5g39570.1 68418.m04793 expressed protein
Length = 386
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 505 PVSEVEKYISISDMVLIMTVEPXFGGQKFMENQMAKVQYLR 627
P+ V + D +L+M + P GG + + +A V R
Sbjct: 54 PIQVVVVMFKVKDQILVMDLNPVMGGNRNLSTDLAMVDKRR 94
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 208 QKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEKPEQWI 375
QK LDN A+ +H+D G+++ + + + ++ D H+ +++PE +I
Sbjct: 817 QKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFEL-DQMLVAHLKLKRPESFI 871
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,278
Number of Sequences: 28952
Number of extensions: 239053
Number of successful extensions: 623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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