Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0383
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 301 2e-82
04_01_0103 + 1082077-1082167,1083037-1085477 296 1e-80
02_04_0017 + 18937774-18937864,18938505-18940945 295 2e-80
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 263 8e-71
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 192 3e-49
03_05_0511 + 25056018-25059107 124 9e-29
02_04_0148 - 20198407-20201424 116 1e-26
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 66 2e-11
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 61 7e-10
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.49
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 30 2.0
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 29 3.4
07_03_0896 + 22373348-22374946 29 3.4
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 4.5
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 29 4.5
10_08_0081 + 14710478-14710822 28 6.0
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 6.0
09_04_0740 + 19850745-19851254 28 7.9
07_01_0244 + 1786009-1788048 28 7.9
02_02_0340 + 9135846-9138377 28 7.9
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 301 bits (740), Expect = 2e-82
Identities = 149/225 (66%), Positives = 178/225 (79%), Gaps = 3/225 (1%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPAD 192
E++E VP GN +VG+DQF+ K T+T K +A +K MKFSVSPVVRVAV+ K +D
Sbjct: 437 ESVEGVPCGNTVAMVGLDQFITKNATLTNEKEVDACPIKAMKFSVSPVVRVAVQCKVASD 496
Query: 193 LPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDP 369
LPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S P
Sbjct: 497 LPKLVEGLKRLAKSDPMVLCTVEESGEHIIAGAGELHLEICLKDLQEDFMGGAEITVSPP 556
Query: 370 VVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYL 549
VVS+RETV E+S + +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K R++ L
Sbjct: 557 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKIL 616
Query: 550 TEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVV 684
+E++ +D A+KIWCFGPE TGPNI+VD KGVQYLNEIKDSVV
Sbjct: 617 SEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVV 661
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 296 bits (726), Expect = 1e-80
Identities = 145/225 (64%), Positives = 177/225 (78%), Gaps = 3/225 (1%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHN--MKVMKFSVSPVVRVAVEPKNPAD 192
E++EDVP GN +VG+DQF+ K T+T K A ++ MKFSVSPVVRVAV+ K +D
Sbjct: 441 ESVEDVPCGNTVAMVGLDQFITKNATLTNEKEADACPIRAMKFSVSPVVRVAVQCKVASD 500
Query: 193 LPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDP 369
LPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S P
Sbjct: 501 LPKLVEGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPP 560
Query: 370 VVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYL 549
VVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L
Sbjct: 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKIL 620
Query: 550 TEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVV 684
+E++ +D A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVV
Sbjct: 621 SEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVV 665
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 295 bits (725), Expect = 2e-80
Identities = 145/225 (64%), Positives = 178/225 (79%), Gaps = 3/225 (1%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPAD 192
E++EDVP GN +VG+DQF+ K T+T K +A ++ MKFSVSPVVRVAV+ K +D
Sbjct: 441 ESVEDVPCGNTVAMVGLDQFITKNATLTNEKESDACPIRAMKFSVSPVVRVAVQCKVASD 500
Query: 193 LPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDP 369
LPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S P
Sbjct: 501 LPKLVEGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPP 560
Query: 370 VVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYL 549
VVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L
Sbjct: 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKIL 620
Query: 550 TEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVV 684
+E++ +D A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVV
Sbjct: 621 SEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVV 665
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 263 bits (645), Expect = 8e-71
Identities = 130/233 (55%), Positives = 171/233 (73%), Gaps = 11/233 (4%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPAD 192
E+++DVP GN +VG+DQF+ K T+T K +AH +K MKFSVSPVVR +V KN ++
Sbjct: 443 ESVDDVPCGNTVAMVGLDQFITKNATLTDEKAVDAHPIKAMKFSVSPVVRKSVACKNASE 502
Query: 193 LPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDP 369
LPKLVEGLKRLAKSDP+V C EESGEH++AG G+LHLEIC+KDL+ED I P
Sbjct: 503 LPKLVEGLKRLAKSDPLVVCTIEESGEHVIAGVGQLHLEICIKDLQEDFMGGAEIIVGPP 562
Query: 370 VVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM-PDGLPED-------IDEGRVNPRDD 525
+++YRETV + S + +SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+DD
Sbjct: 563 IITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDD 622
Query: 526 FKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVV 684
K R + L+E++ +D A+KIW FGPE GPN+LVD KGVQYL+EIKDSVV
Sbjct: 623 IKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVV 675
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 192 bits (467), Expect = 3e-49
Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 7/227 (3%)
Frame = +1
Query: 25 IEDVPSGNICGLVGVDQFLVKTGTITTFK---NAHNMKVMKFSVSPVVRVAVEPKNPADL 195
I P+G+ + GVD ++KT TI K + + + ++F+ PVV++A EP NP++L
Sbjct: 565 ISKAPAGSWVLIEGVDASIMKTATICPMKMDEDVYIFRPLRFNTLPVVKIAAEPLNPSEL 624
Query: 196 PKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVV 375
PK+VEGL++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVV
Sbjct: 625 PKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVV 684
Query: 376 SYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTE 555
++ ETV + S C +++PNK N++ M A+P+ GL EDI+ G V+ K + +
Sbjct: 685 TFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQ 744
Query: 556 KYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQ----YLNEIKDSVV 684
+Y++DV AR IW FGPE GPNIL+D + V+ LN +KDS+V
Sbjct: 745 RYQWDVLAARSIWAFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIV 791
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 124 bits (298), Expect = 9e-29
Identities = 60/139 (43%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Frame = +1
Query: 25 IEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKL 204
+ V +GN+ + G+ ++K+ T+++ KN M F VSP+++VA+EP NPADL L
Sbjct: 494 VSSVCAGNVVAIQGLGHHILKSATLSSTKNCWPFSSMMFQVSPMLKVAIEPSNPADLGAL 553
Query: 205 VEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 384
V+GLK L ++DP V+ + GEH++A AGE+HLE C KDLEE A + + SDP+VS++
Sbjct: 554 VKGLKLLNRADPFVEYTVSQRGEHVLAAAGEIHLERCKKDLEERFAKVKLVVSDPLVSFK 613
Query: 385 ETVAEESDQLCLS-KSPNK 438
ET+ E L S K+P +
Sbjct: 614 ETIEGEGLALIESLKAPRE 632
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 116 bits (280), Expect = 1e-26
Identities = 51/128 (39%), Positives = 86/128 (67%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLP 198
E + V +G++ + G+ ++K T+++ KN M F VSP+++VA+EP NP+DL
Sbjct: 472 EIVSAVRAGDVLAIEGLGHHVLKNATLSSTKNCQPFSGMMFQVSPMLKVAIEPSNPSDLG 531
Query: 199 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 378
LV+GLK L ++DP ++ E GEH++A AGE+HLE C+K+L+E A + ++ S P+VS
Sbjct: 532 ALVKGLKLLNQADPFIEYTVSERGEHVLAAAGEIHLEHCIKNLQERFARVQLEVSKPLVS 591
Query: 379 YRETVAEE 402
+++T+ E
Sbjct: 592 FKDTIQGE 599
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTG-TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADL 195
E I +G+I L G+ + TG T++ ++ M+F PV++VA+EPK AD
Sbjct: 415 EDITVAVAGDIVALAGLKDTI--TGETLSDPDKPVVLERMEFP-DPVIKVAIEPKTKADA 471
Query: 196 PKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPV 372
K+ GL +LA+ DP +EE+ + ++ G GELHL+I + L+ + + P
Sbjct: 472 DKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRLKREFR-VEANVGAPQ 530
Query: 373 VSYRETVAEESD 408
V+YRE++++ S+
Sbjct: 531 VNYRESISKISE 542
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 61.3 bits (142), Expect = 7e-10
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Frame = +1
Query: 19 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLP 198
E I++ +G I + GVD T T + M M PV+ +AV P +
Sbjct: 436 EDIQEAHAGQIVAVFGVD--CASGDTFTDGSVKYTMTSMNVP-EPVMSLAVSPISKDSGG 492
Query: 199 KLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVV 375
+ + L R K DP + ++ ESGE I++G GELHL+I ++ + ++ + K P V
Sbjct: 493 QFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERIRREYK-VDAKVGKPRV 551
Query: 376 SYRETVAE--ESDQLCLSKS--PNKHNRLFMKAQPMP 474
++RET+ + E D L +S ++ R+ +P+P
Sbjct: 552 NFRETITQRAEFDYLHKKQSGGQGQYGRVCGYIEPLP 588
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 293 PAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTT 153
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/87 (31%), Positives = 33/87 (37%)
Frame = +1
Query: 172 EPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIP 351
+P +PA LP EGL R A Q + E V GEL I LK+ I
Sbjct: 59 KPCDPAPLPTQCEGLLRGASEPESAQALQEPD----VLSVGELLGAIALKE-----PIIS 109
Query: 352 IKKSDPVVSYRETVAEESDQLCLSKSP 432
S P + + CLS SP
Sbjct: 110 SPSSSPQAVPEDNIDAVPSGCCLSSSP 136
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Frame = +1
Query: 28 EDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKV--MKFSVSPVVRVAVEPKNPADLPK 201
E +PS +C + +TT + + M+V + +VSP ++ V+P P
Sbjct: 27 EQLPSQGVCVTLSCLTVGKSEVPLTTRFDGNAMQVDGLLKNVSPTTKIVVKPNEELKSPF 86
Query: 202 LVEGLKRLAKSDPMV--------QCINEESGEHIVAGAGELHLEICLKDLEE 333
LV+ L + DP++ + +E V +G L + + L D++E
Sbjct: 87 LVKRHLFLKRPDPIILDELYSLTTKVTDEESRQSVWVSGNLPINLKLVDIQE 138
>07_03_0896 + 22373348-22374946
Length = 532
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = -2
Query: 350 GMQAWSSSRSLRQISRWS--SPAPATMCSPDSSLI-HCTMGSDLARRLRPSTSLGRSAGF 180
G AW +S W+ PA + P SS C G L L S LGR
Sbjct: 92 GAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGCLAGGFLLTTLADSL-LGRRKML 150
Query: 179 LGSTATRTTGDTLNFITFMLWAF 111
L S A+ + L + +WA+
Sbjct: 151 LVSLASMSVAGVLTAFSPNVWAY 173
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 400 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 489
E + LCL PN+H + + A+ +P LPE
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +1
Query: 40 SGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLK 219
+G+ L G ++ TG T + N+ + K P +R +PKN + + GL
Sbjct: 271 TGSATILTGDQPVIIYTGADTEKRQVQNIVLPKNRSDPYLREWTKPKNNPLIEPVGPGLN 330
Query: 220 RLAKSDPMVQCINEESGEHIVAGA 291
DP I + I GA
Sbjct: 331 SNQFRDPTTGWIGPDGLWRIAVGA 354
>10_08_0081 + 14710478-14710822
Length = 114
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 434 LGDFERQSWSDSSATVSRYDTTGSDFLIGMQAWSS-SRSLRQISRWSSPAPAT 279
+ R SWSD V+R T+ + + W+ R +R S WSS AP T
Sbjct: 1 MSHLRRLSWSDQ--VVARQPTSEEEDVDAGGRWTEVRRKVRPHSWWSSNAPTT 51
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = -2
Query: 311 ISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFI 132
++ W+ PAP T+ P++S + ++ SL G T T GD L ++
Sbjct: 1040 VAEWT-PAPETVSIPEASTDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYL 1098
Query: 131 TFMLWAFLKVV 99
W+ + V
Sbjct: 1099 ATPSWSLTRSV 1109
>09_04_0740 + 19850745-19851254
Length = 169
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 51 LWSCWSRSVLSQDWYHH-HFQECPQHEGDEIQCI 149
LW C+S Q++Y H F C GD + C+
Sbjct: 30 LWFCYSPYYQLQNYYRHGEFDNCFGKWGDLVDCL 63
>07_01_0244 + 1786009-1788048
Length = 679
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 474 RHGLSLHEQTVVLVGRL*ETELVRFLSY 391
RHG++ ++++GRL LVR L Y
Sbjct: 397 RHGMTQFTAEIIILGRLRHRNLVRLLGY 424
>02_02_0340 + 9135846-9138377
Length = 843
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 374 TTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCS 270
TTGSD L G+Q + R+L I+ P +CS
Sbjct: 801 TTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCS 835
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,415,555
Number of Sequences: 37544
Number of extensions: 462400
Number of successful extensions: 1480
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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