Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0383
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 385 e-107
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 2e-48
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 54 1e-07
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 36 0.040
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.7
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 29 2.7
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 2.7
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 29 3.5
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 4.6
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20) 28 6.1
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17) 28 8.1
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.1
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 385 bits (948), Expect = e-107
Identities = 181/227 (79%), Positives = 200/227 (88%), Gaps = 1/227 (0%)
Frame = +1
Query: 7 GTLCEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNP 186
G E I DVP GNI GLVGVDQFLVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNP
Sbjct: 429 GRYIEPIVDVPCGNIVGLVGVDQFLVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNP 488
Query: 187 ADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSD 366
ADLPKLVEGL RLAKSDPMVQ EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+
Sbjct: 489 ADLPKLVEGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSE 548
Query: 367 PVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRAR 543
PVVSYRE V+++S+Q+CLSKSPNKHNRLFM A P+ + LPEDID+G +NPR DFK RAR
Sbjct: 549 PVVSYRECVSDKSNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRAR 608
Query: 544 YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVV 684
YL + Y +DV EARKIW FGPEGTGPN+LVD SKGVQYLNEIKDSVV
Sbjct: 609 YLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVV 655
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 189 bits (461), Expect = 2e-48
Identities = 94/227 (41%), Positives = 144/227 (63%), Gaps = 7/227 (3%)
Frame = +1
Query: 25 IEDVPSGNICGLVGVDQFLVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADL 195
+ VP+GN + GVDQ +VKT TIT + A+ + +KF+ +++AVEP NP++L
Sbjct: 409 VNRVPAGNWVLIEGVDQPIVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSEL 468
Query: 196 PKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVV 375
PK+++GL+++ KS P++ EESGEH++ G GEL+L+ + DL ++ I IK +DPV+
Sbjct: 469 PKMLDGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVI 528
Query: 376 SYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTE 555
++ ETV E S C +++PNK N++ M A+P+ GL EDI+ +V + K +
Sbjct: 529 AFCETVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQT 588
Query: 556 KYEYDVTEARKIWCFGPEGTGPNILVD----CSKGVQYLNEIKDSVV 684
KY++D+ AR IW FGPE TGPNILVD LN +KDS++
Sbjct: 589 KYDWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKDSII 635
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 54.0 bits (124), Expect = 1e-07
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +1
Query: 271 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 393
EH++ AGE+HL+ C+ DL+ +AC+ + SDP++ +RETV
Sbjct: 2 EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 580 ARKIWCFGPEGTGPNILVD 636
A IW FGP GTGPNIL++
Sbjct: 179 ADHIWAFGPRGTGPNILLN 197
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 35.5 bits (78), Expect = 0.040
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 407 SDSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCT---MG 237
+ SA S + +TG D IG A S + R + +S T +P SL T
Sbjct: 548 ASESAAFSLHSSTGGD--IGTMASSQALFERLRATRTSKVSDTRNTPSPSLSSDTPSPAS 605
Query: 236 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKVVMVP-VLTKN*STPT 60
L ++ AG+ S+A+ TT +N++TF K V VP L+ + S+P
Sbjct: 606 PSLLEQIEGDLP-SHLAGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPA 664
Query: 59 RPQMLPE 39
P +L E
Sbjct: 665 SPSILGE 671
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 34.7 bits (76), Expect = 0.071
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 190 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 312
DL + + + R + DP + ++ES E I++G GELHL++
Sbjct: 36 DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 352 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDD 525
I+K+ Y+E + +E++ L + N+H+ + AQ P GL I+E + N R
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275
Query: 526 FK 531
FK
Sbjct: 276 FK 277
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -2
Query: 254 IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 147
I C MG D RLR ST L R F+GS T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 236 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 102
S+ RR +P T GR+ FLG+ + R T NF+ F+ F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 238 PMVQCINEESGEHIVAGAGELHLEICLKDLEE 333
P Q + E EH+VA +G+L E C K L +
Sbjct: 26 PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +1
Query: 331 EDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 510
+DH C + + + V E D+ CL + P + M P+ D GR
Sbjct: 33 KDHTCAAL-----LYTKMTAVNLEGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRD 87
Query: 511 NPRDDFKTR 537
PRDD K +
Sbjct: 88 GPRDDEKQK 96
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 379 YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 522
Y+ + L K N H+ LF K + +P L ED++EG V D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 430 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 522
PN N F+KA P+ DG D + G + RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443
>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +1
Query: 226 AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 339
AK DP + C NE+SGEH + GE +L I ++ +++D+
Sbjct: 7 AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46
>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
Length = 165
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 199 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 321
++V+ L A DP + +N S H A G+LH CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 515 PAMTSRLALGILQKSTNMMLPKPVRFGALAPRVPA 619
PA + GI++ ST ++P P+R + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 350 GMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGS 171
G ++ S S +R +P P T S + GS + P+T+ R++ +
Sbjct: 181 GSRSSSISPGMRSSLGSIAPPPRTSTPRSRSTLRSRAGSRIRTPSTPTTTSSRASSRESA 240
Query: 170 TATRTTGDTLNFIT 129
TRTT T +T
Sbjct: 241 RGTRTTTTTKKCVT 254
>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 28.3 bits (60), Expect = 6.1
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Frame = +1
Query: 88 TGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEES 267
TGT + + V V V V P LP KR+ +P N +
Sbjct: 279 TGTFACRRVSRTTDVSNLEEPRSVAVTVNPGLLVVLPTCETCGKRVDMMNP-----NRKK 333
Query: 268 GEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR-ETVAEESDQLCL 420
GE V G E +C + + DH C D + + T ++ D +CL
Sbjct: 334 GEEHVCG--EYKCSVCKEVVPPDHLCYLTVGDDALPKKKNSTDDDDDDSMCL 383
>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
Length = 232
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 373 VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 522
V +R + +D L+ + N H+ LF K + +P L ED++EG V D
Sbjct: 29 VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
Frame = +1
Query: 466 PMPDGLPEDIDEGR----VNPR 519
P+PDG+ E+IDEG+ +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,953,584
Number of Sequences: 59808
Number of extensions: 519266
Number of successful extensions: 1531
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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