Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0383
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    27   0.22 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.89 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 601 GPEGTGPNILVDCSKGVQYLNEI 669
           GP   GP+ ++D + GV Y  +I
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQI 316


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 669 NFIEVLNSFGAIHQDVGAGTLGAKAPNLTGFGNIIFV 559
           +F   +   G  H  V AG +GA+ P+   +GN + V
Sbjct: 888 SFNHFVLKMGINHGPVTAGVIGARKPHYDIWGNTVNV 924


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 99  HHFQECPQHEGDEIQCITSRACRC 170
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 629 RMLGPVPSGPKHQILRASVTSYSYFSVRY 543
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 629 RMLGPVPSGPKHQILRASVTSYSYFSVRY 543
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 433 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 567
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 433 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 567
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,526
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)