Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0382
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    42   0.009
UniRef50_A0E7G2 Cluster: Chromosome undetermined scaffold_81, wh...    36   0.44 
UniRef50_Q482E5 Cluster: Site-specific recombinase, phage integr...    36   0.58 
UniRef50_Q0UQA6 Cluster: Putative uncharacterized protein; n=1; ...    33   3.1  
UniRef50_Q7VYD5 Cluster: Colicin V production protein; n=4; Bord...    32   9.5  
UniRef50_Q7Z401 Cluster: C-myc promoter-binding protein; n=38; T...    32   9.5  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 41.9 bits (94), Expect = 0.009
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = -3

Query: 345 ILGSLYSVNYKRSKPPLLNMVTLYEPCILLIVTYAS 238
           ILG LY +  KRSK  L N VTLY+ CI  ++TYAS
Sbjct: 791 ILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 826


>UniRef50_A0E7G2 Cluster: Chromosome undetermined scaffold_81, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_81, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1639

 Score = 36.3 bits (80), Expect = 0.44
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 453  QYYV*IFIERATKYGRYYDYPCPLLYIVSPESGCENILGSLYSVNY 316
            Q+Y    IE   +YG+YYDY   L Y+ S   G   I  S Y +NY
Sbjct: 1474 QFYNVSQIEFVNRYGQYYDYDNDLDYLKSGILGIMGIQSSYYQLNY 1519


>UniRef50_Q482E5 Cluster: Site-specific recombinase, phage integrase
           family; n=1; Colwellia psychrerythraea 34H|Rep:
           Site-specific recombinase, phage integrase family -
           Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
           (Vibriopsychroerythus)
          Length = 334

 Score = 35.9 bits (79), Expect = 0.58
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = +2

Query: 29  GSGRVTEYQTRVLFSFPYLFARGSFQLRPDVGIGELTGSARNKLLTLVLERAIGSESCPI 208
           G  +   +++ +   F + + RG  ++ P VG+ + T  AR++ +T V  +A+ + +CP+
Sbjct: 122 GISQANRHKSALQSIFSWAYERGKIKVNPCVGVKKFTEKARDRYVTDVEYQALLNHACPV 181


>UniRef50_Q0UQA6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 1091

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 24/96 (25%), Positives = 48/96 (50%)
 Frame = -3

Query: 321 NYKRSKPPLLNMVTLYEPCILLIVTYASAH*VSRQ*LSIGHDSDPMALSRTSVSNLFLAE 142
           N KR    +L ++  Y  CI + V +  ++ V +   +I   ++  A +R ++SN++ A+
Sbjct: 166 NIKREYNKVLQLLNAYA-CISVGVKFTVSNLVPKGKKTIAFSTNSNASTRDNISNVYGAK 224

Query: 141 PVSSPIPTSGRNWNDPLANR*GKEKRTRVWYSVTRP 34
            +S+ IP +   +    +NR G  +  R W +   P
Sbjct: 225 TISALIPLN-LEFEMDASNRPGSTQTARNWSTQEDP 259


>UniRef50_Q7VYD5 Cluster: Colicin V production protein; n=4;
           Bordetella|Rep: Colicin V production protein -
           Bordetella pertussis
          Length = 162

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 116 DVGIGELTGSARNKLLTLVLERAIGSESCPIDNYWRETQWA 238
           D G+G + G AR  +L LVL    G    P +++WR+  ++
Sbjct: 98  DHGLGAMFGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFS 138


>UniRef50_Q7Z401 Cluster: C-myc promoter-binding protein; n=38;
           Tetrapoda|Rep: C-myc promoter-binding protein - Homo
           sapiens (Human)
          Length = 1863

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 159 NLFLAEPVSSPIPTSGRNWNDPLANR*GKEKRTRVWYSVT 40
           NL L++PVSSP+P SG  ++  L N   +   T + ++VT
Sbjct: 375 NLILSQPVSSPLPLSGGKFSTLLQNLGPENAVTLLVFAVT 414


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,411,425
Number of Sequences: 1657284
Number of extensions: 8582119
Number of successful extensions: 17358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17356
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)