Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0382
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   5.4  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.1  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.4  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 274 RTLYTPDRYLRECPLSFS 221
           RTL+   R+LR CPLS S
Sbjct: 353 RTLWAICRHLRTCPLSLS 370


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -1

Query: 272 NLVYS*SLLTRVPTEFLASSYQ*GTI-PIRWLF----LGLVLAICFWRS 141
           NL Y   LLT+ P   L S+Y    +  I W F    + L++A CF R+
Sbjct: 71  NLGYGWLLLTKYPVYVLLSTYYLTPLSQIAWAFIIDAISLLVARCFSRA 119


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 274 RTLYTPDRYLRECPLSFSPVVINRAR 197
           ++L T DRYL +CP  F     N+AR
Sbjct: 55  KSLETYDRYLLQCPNDFD-ARFNKAR 79


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -2

Query: 397 LPMSSSLHSQSGIRLRKHPRQSLL---RQLQAK*TAPS*YGNTLRTLYTPDRYLRECPLS 227
           +P SS + S     L KHP QS+     QL      P    NT     +P   +R  PLS
Sbjct: 14  IPSSSPMASHKKSWLSKHPNQSMTFEKPQLGQFVLTPEPSSNTFYAPSSPASAVRREPLS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,904
Number of Sequences: 5004
Number of extensions: 36287
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)