Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0382
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0583 - 4321992-4322165,4322261-4322353,4322445-4322828,432...    31   0.77 

>01_01_0583 -
           4321992-4322165,4322261-4322353,4322445-4322828,
           4322909-4322993,4323206-4323444,4323542-4323747,
           4324052-4324163
          Length = 430

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 373 SQSGIRLRKHPRQSLLRQLQAK*TAPS*YGNTLRTLYTPDRYLRECPLSFSPVVIN 206
           S S  RLR+  + + L +  +   APS   NT++T+   D   +E PLS+   + N
Sbjct: 179 SPSTFRLREQKQMTALSEFPSNFAAPSTEANTVKTM-KQDNQSKETPLSWIDCISN 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,470
Number of Sequences: 37544
Number of extensions: 230695
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)