Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0382
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.49 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 402 YDYPCPLLYIVSPESGCENILGSLYSVN 319
           YDYP P    V+PE+  +N++  + +VN
Sbjct: 129 YDYPSPEWDTVTPEA--KNLINQMLTVN 154


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 261 VYKVRKVLPY*EGAVYFAC 317
           +YKV  V  Y +G V F C
Sbjct: 790 IYKVGNVQAYIDGNVVFVC 808


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 288 MVTLYEPCILLIV 250
           ++ +Y PC+LL+V
Sbjct: 217 LIQVYGPCVLLVV 229


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -3

Query: 336 SLYSVNYKRSKPPLLNMVTLYEPCILLIV 250
           S+  V++   +     ++ +Y PC+L++V
Sbjct: 232 SVLQVSFNLQRHTGYFLIQVYVPCVLIVV 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,169
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)