Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0380
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   7.5  
AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical ...    28   7.5  

>Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical
           protein T26H2.6 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 57  RNLKLFPGWHPLYNIFTLLMP*MIIAG 137
           +NLK F GW  LY +F++L+  ++  G
Sbjct: 127 KNLKYFFGWRLLYFVFSMLIVAVVYGG 153


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 655 ISKILNLVHYVVGIL--NSFVMHCIHNALGSTNTERTKLTK 539
           + +I+N V +V+ IL  N FV++CI+N   S+N   +  TK
Sbjct: 211 LGRIMN-VFFVIEILQINYFVIYCIYNLFFSSNKFTSAKTK 250


>AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK6.6 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 655 ISKILNLVHYVVGILNSFVMHCIHNALGSTNTERTKLTKYKIT 527
           +S  LNL HYV+GI    V+ CI   L      +T++ + K+T
Sbjct: 263 LSPFLNLYHYVIGIPLLCVLSCI---LFFRQARQTQVMERKLT 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,201
Number of Sequences: 27780
Number of extensions: 287939
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)