Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0380
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 64  RLRKNYVHKHRFSYEQRLI 8
           R RK+ VHK + S EQR +
Sbjct: 103 RERKHAVHKEQLSREQRFL 121


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 452 KYTNLSTAFLLHTSLFTVYQYVTYYRNFILS 544
           KY+N +     + + +  Y    YY+N+I++
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 407 DYGKHIYCTYCSL 445
           +YG+ I CTY +L
Sbjct: 210 NYGRRINCTYVAL 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,838
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)