Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0380
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22880.1 68418.m02676 histone H2B, putative strong similarity... 34 0.11
At1g07790.1 68414.m00843 histone H2B, putative strong similarity... 32 0.32
At4g23150.1 68417.m03341 protein kinase family protein contains ... 31 0.99
At3g53650.1 68416.m05926 histone H2B, putative similar to histon... 31 0.99
At1g54360.2 68414.m06198 expressed protein 31 0.99
At1g54360.1 68414.m06197 expressed protein 31 0.99
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 29 3.0
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple... 28 5.3
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 28 7.0
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 27 9.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 27 9.2
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 27 9.2
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 27 9.2
>At5g22880.1 68418.m02676 histone H2B, putative strong similarity to
histone H2B-3 Lycopersicon esculentum GI:3021485, H2B
Gossypium hirsutum SP|O22582; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 700 KNVHLYNIYIYKI-ENISKILNLVHYVVGILNSFVMHCIHNALGSTNTERTKLTKY--KI 530
KNV Y IYI+K+ + + + + +GI+NSF+ G E +KL +Y K
Sbjct: 53 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAG----ESSKLARYNKKP 108
Query: 529 TIVS 518
TI S
Sbjct: 109 TITS 112
>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
Capsicum annuum SP|O49118; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 148
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -3
Query: 700 KNVHLYNIYIYKI-ENISKILNLVHYVVGILNSFVMHCIHNALGSTNTERTKLTKY--KI 530
KNV Y IYI+K+ + + + + +GI+NSF I++ E +KL +Y K
Sbjct: 56 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSF----INDIFEKLAQESSKLARYNKKP 111
Query: 529 TIVS 518
TI S
Sbjct: 112 TITS 115
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 30.7 bits (66), Expect = 0.99
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 174 NASIKAGFSNGLHQQ*SFKALTT*IYCIEDASPEIVSGCVKITCTNT 34
NAS GF N Q + +T C D SPE+ CV NT
Sbjct: 60 NASYSTGFQNATVGQ-ALDRVTGLFLCRGDVSPEVCRNCVTFAVNNT 105
>At3g53650.1 68416.m05926 histone H2B, putative similar to histone
H2B from Lycopersicon esculentum, PIR:T06389 GI:3021483,
Gossypium hirsutum SP|O22582, Capsicum annuum SP|O49118;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 700 KNVHLYNIYIYKI-ENISKILNLVHYVVGILNSFVMHCIHNALGSTNTERTKLTKYKITI 524
KN+ Y IYI+K+ + + + + +GI+NSF+ + I L ++ + K K TI
Sbjct: 46 KNIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFI-NDIFEKLAQESSRLARYNK-KPTI 103
Query: 523 VS 518
S
Sbjct: 104 TS 105
>At1g54360.2 68414.m06198 expressed protein
Length = 447
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 54 LRNLKLFPGWHPLYNIFTLLMP*MIIAGVSH*KILLLLMR 173
L +L++ PG HPL FT + I+ + + ILL LMR
Sbjct: 128 LASLEIDPGLHPLVPFFTSFIAEEIVKNMDNYPILLALMR 167
>At1g54360.1 68414.m06197 expressed protein
Length = 447
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 54 LRNLKLFPGWHPLYNIFTLLMP*MIIAGVSH*KILLLLMR 173
L +L++ PG HPL FT + I+ + + ILL LMR
Sbjct: 128 LASLEIDPGLHPLVPFFTSFIAEEIVKNMDNYPILLALMR 167
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 247 KQTCASHDCLCRFTWGAY 300
K C DC C+ TWG+Y
Sbjct: 523 KTACQCRDCKCKNTWGSY 540
>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein contains Pfam profiles PF02201: BAF60b domain of
the SWIB complex, PF02213: GYF domain, PF00628:
PHD-finger
Length = 824
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 635 CTLCRRDTEFVCYAL-YSQCSR 573
CT C++D+ ++CY YS C R
Sbjct: 128 CTTCQKDSFYMCYTCPYSVCKR 149
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 431 TYCSLLNKYTNLSTAFLLHTSLFTVYQYVTYYRNFIL 541
TYCSLL+ Y N L+H+ VY V R +L
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLL 597
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 247 KQTCASHDCLCRFTWGAY 300
K+ C +C C+ TWG+Y
Sbjct: 524 KKACQCPECSCKNTWGSY 541
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 247 KQTCASHDCLCRFTWGAY 300
K+ C +C C+ TWG+Y
Sbjct: 524 KKACQCPECSCKNTWGSY 541
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 247 KQTCASHDCLCRFTWGAY 300
K+ C +C C+ TWG+Y
Sbjct: 524 KKACQCPECSCKNTWGSY 541
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 247 KQTCASHDCLCRFTWGAY 300
K+ C +C C+ TWG+Y
Sbjct: 524 KKACQCPECSCKNTWGSY 541
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,125
Number of Sequences: 28952
Number of extensions: 243264
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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