Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0379
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    30   1.3  
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    30   1.7  
10_08_0618 + 19307658-19308584,19308690-19309082                       28   6.9  
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96...    28   6.9  
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652...    27   9.2  
01_06_1125 + 34683184-34684776                                         27   9.2  

>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 206 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 385
           ++ +   D KELK  +KD  +    K +D+ K  + K V   +       +   + + P 
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286

Query: 386 DEFKEIY 406
            E+  +Y
Sbjct: 287 SEYHSVY 293


>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 305 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 469
           S  K +KHI  ++  + + ++ KYD P D FK + +  +A  + +C  C+    +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427


>10_08_0618 + 19307658-19308584,19308690-19309082
          Length = 439

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 146 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 250
           D DEI E+    +PY+K V+ EG R  P G  + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356


>02_01_0135 +
           967172-967229,968316-968657,968936-969015,969063-969698,
           969819-971527,971563-972514,972821-973273,974303-974497
          Length = 1474

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 110 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 289
           +A   + K DN  + E L+  K L+   + V+DE     D   L+ HI+ G  +  A CT
Sbjct: 88  LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143

Query: 290 DKQ 298
           + +
Sbjct: 144 NPE 146


>11_01_0779 +
           6518556-6518601,6519825-6519967,6520091-6520114,
           6520140-6520286,6521957-6522142,6522232-6522490,
           6522738-6522969,6523081-6523231,6523322-6523499,
           6523916-6524191,6524414-6524642,6524754-6524904,
           6525013-6525192
          Length = 733

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 113 AEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKD-GMQTACAKCT 289
           + + T +Y +++ D+IL+ ++ +   + CV  + +  P   E+   + D G +       
Sbjct: 404 SSQITSRYPSLEEDDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDKGTEVKQGVLP 463

Query: 290 DKQKVSARKIVKHIKQHEADYWEQMKA 370
           + + V+ +K++  +     D   Q +A
Sbjct: 464 NGELVAVKKLLDSVTAVNQDKQFQSEA 490


>01_06_1125 + 34683184-34684776
          Length = 530

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 335 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 427
           +  A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,504
Number of Sequences: 37544
Number of extensions: 290896
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)