Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0379
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical...    28   6.2  
Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   8.2  
U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.       27   8.2  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 155 EILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIK 334
           +IL   K LVPY+ C+L+      D K         M++ C + T  +  S  +I+   K
Sbjct: 464 QILTAAKQLVPYVSCILNMNAMI-DPKRCHPPDPAPMESICLEITGIEPNSQNRILAIEK 522

Query: 335 QHE 343
           + E
Sbjct: 523 EEE 525


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 239  LKAHIKDGMQTACAKCTDKQ 298
            L   +KD +QT C+KC D Q
Sbjct: 1727 LSGSLKDAVQTLCSKCNDVQ 1746


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 185 PYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQ 337
           P+   ++  GR T D ++   H      TAC KC +K  +S  ++++H  +
Sbjct: 569 PFAIHMVCAGRYTEDQRQAAKH----HPTACLKCQEKHILSNEEMIEHANE 615


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 KYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHI 253
           K  DKY  +D+D +  NR  +V  +K  ++   C  D   LK  I
Sbjct: 288 KILDKYAGVDIDVV--NRSRMVEMLKMNMENDACDIDLSTLKIAI 330


>AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical
           protein Y43F8B.15 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
 Frame = +2

Query: 284 CTDKQKVSARKIVK---HI-----KQHEADYWEQM----KAKYDPKDE-FKEIYE 409
           CTD QKV   +++    H      KQH  DYW+++       + P DE FK +Y+
Sbjct: 95  CTDSQKVLCNEVIITTFHALFDLKKQHPHDYWKRIILYHTNDFTPTDEQFKRLYK 149


>Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical
           protein T22B3.1 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 149 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 325
           VD  +    +L+P +K     GR T +      H  D     C  CT   +   A  + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173

Query: 326 HIKQHEADYWEQM 364
           H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 339 CCLMCLTIFLADTFCLSVHFAHAVCIPS 256
           CC++ L + LA  F LS      VC P+
Sbjct: 129 CCILSLVVSLAKLFYLSEDIVLTVCYPT 156


>U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 149 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 325
           VD  +    +L+P +K     GR T +      H  D     C  CT   +   A  + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173

Query: 326 HIKQHEADYWEQM 364
           H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 221 TPDGKELKAHIKDG--MQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKY 376
           TP  K L+   K G   Q    K    +K +A+K+V   + +  +YW+  + ++
Sbjct: 684 TPGEKSLEIQEKSGEKSQKPAKKGQKSEKKAAKKVVVEERNYWVEYWQPREKRW 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,014
Number of Sequences: 27780
Number of extensions: 273965
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)