Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0378
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    29   3.2  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   4.2  
01_06_1092 + 34469732-34470118                                         28   5.6  
08_02_0610 + 19307537-19308011,19308187-19310846                       27   9.8  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    27   9.8  

>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 169 CATRDDPGLRVRYQGPCSEGNVGFP 243
           C T+ DPG  +R  G   EG+ G+P
Sbjct: 745 CTTKVDPGPDIRTNGDSREGDTGWP 769


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 495  HSLRGSRCCT*YRHCRRPASSRACTCTKGI 406
            H+ + SRCC  Y  C RP  SR+C C+  I
Sbjct: 1032 HTSQASRCCRSYVKCSRP--SRSC-CSHSI 1058


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 387 IVDGPSKYPSCT--CTREMKPVCGSDGITYNNDC 482
           + DG S+   C   C R   PVCG+DG+TY   C
Sbjct: 46  VSDGGSEAQLCPVRCFRP-DPVCGADGVTYWCGC 78



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 100 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEG 228
           C+R   PVCG DG TY       C      G RV  +G C  G
Sbjct: 60  CFRPD-PVCGADGVTY----WCGCPEAACAGARVARRGYCEVG 97


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 559  SSTLGRKG-TTTEYDPCNRTAYASRT 633
            ++T GR G TTT  +PC  T+ ASRT
Sbjct: 940  AATSGRTGPTTTTANPCTCTSRASRT 965


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 94   CACYRNQ-RPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVG 237
            C C +    P+C   G T+  EC+L+C       ++ RY    S  ++G
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILECLLAQKKDIK-RYPQIRSRPSIG 1233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,116
Number of Sequences: 37544
Number of extensions: 384876
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)