Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0378
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 50 2e-06
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 50 2e-06
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.9
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.9
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 6.6
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.6
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 6.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 28 6.6
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 85 PPSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE----GNVGFPAC 249
PP C C RPVCGTD TYNN C L C R + L Y G C + VG P C
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPIC 74
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +3
Query: 381 VKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCADK 551
+ + G S P C C ++PVCG+D +TYNN C L C + L Y G C DK
Sbjct: 7 ILLFTGFSPPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDK 63
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 414 SCTCTREMKPVCGSDGITYNNDCLLN---CATINDSRLGIEYYGPCAD 548
S C P+CG++G+T+ N C L C + N S + + Y G C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESAN-STIEVAYTGMCCD 815
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 423 CTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCAD 548
CT + P+C SD TY N C DS L + + G C++
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 91 SCACYRNQRPVCGTDGKTYNNECLL--DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYD 264
S C + P+CGT+G T+ N C L + + + V Y G C + N C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN-------CPSD 821
Query: 265 LNQVC 279
+ VC
Sbjct: 822 FSPVC 826
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 100 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE 225
C ++ P+C +D TY N C D L V ++G CSE
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 118 PVCGTDGKTYNNECLLD---C--ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC 279
PVC T+G T+ N CL+D C ++ ++V YQG C CD D VC
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ-------PCDEDKTPVC 982
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +3
Query: 420 TCTREMKPVCGSDGITYNNDCLLNCATINDSRLGI-----EYYGPC 542
TC+R++KPVC T+ N C N +LGI Y PC
Sbjct: 374 TCSRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPC 419
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 282 SDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKPVCGSDG 461
+DN TY+ TN L Y+G C D+ + C + P+C + G
Sbjct: 31 TDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKE------------CEKVGTPICDNFG 78
Query: 462 ITYNNDC 482
T+ NDC
Sbjct: 79 ETHINDC 85
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 441 PVCGSDGITYNNDCLLN---CATI--NDSRLGIEYYGPCADK 551
PVC ++G+T+ N CL++ C + N + + Y G C ++
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ 972
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 97 ACYRNQRPVCGTDGKTYNNECLLD 168
AC + PVC ++G+ NEC LD
Sbjct: 871 ACPKEYSPVCASNGQNIVNECELD 894
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Frame = +1
Query: 97 ACYRNQRPVCGTDGKT-------YNNECLLDCATRDDPGLRVRYQGPC 219
+C + +PVC + G+T +N++C+ D + L + YQG C
Sbjct: 1072 SCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC 1119
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 387 IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 542
+VDG K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 456 VVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 100 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQGPCSEGNVGFPACHCDY 261
C N VCGTDGKTY NEC L A ++ + V +G C E C +
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGF 377
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 411 PSCTCTREMKPVCGSDGITYNNDCLLNCATINDSR 515
P+C + P+CGSDGI YNN C LN + D R
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQR 717
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 61 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 219
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 452 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 100 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLN 270
C RPVC T+G+T++NEC + C T+ ++V++QG C +G A
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKS--MIKVKHQGTC---GIGVCATFDSCKKP 451
Query: 271 QVCV 282
QVCV
Sbjct: 452 QVCV 455
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 85 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 225
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 537 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 586
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Frame = +3
Query: 369 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLLNCATIN 506
C K V PS +P C C + VCGSDG TY+N C L N
Sbjct: 845 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACN 900
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 396 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 515
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 310 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 353
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 88 PSCACYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRV 201
P+C N P+CG+DG YNN+C L+ + RD + V
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQREIHV 721
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 432 EMKPVCGSDGITYNNDCLLNCATINDSRLGI-EYYGPC 542
E K VCG+DG+TY+++C + + + S+ + + G C
Sbjct: 547 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 584
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 399 PSKYPSCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 542
P + C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 385 PDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 437
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 387 IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 542
+VDG K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 464 VVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 100 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQGPCSEGNVGFPACHCDY 261
C N VCGTDGKTY NEC L A ++ + V +G C E C +
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGF 385
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 61 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 219
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 460 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 100 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLN 270
C RPVC T+G+T++NEC + C T+ ++V++QG C +G A
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKS--MIKVKHQGTC---GIGVCATFDSCKKP 459
Query: 271 QVCV 282
QVCV
Sbjct: 460 QVCV 463
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 85 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 225
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 545 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 594
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +3
Query: 369 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLL 488
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 784 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 833
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 396 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 515
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 318 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 361
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 432 EMKPVCGSDGITYNNDCLLNCATINDSRLGI-EYYGPC 542
E K VCG+DG+TY+++C + + + S+ + + G C
Sbjct: 555 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 592
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 399 PSKYPSCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 542
P + C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 393 PDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 445
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 414 SCTCTREMKPVCGSDG---ITYNNDCLLNCATINDSRLGIEYYGPC 542
+C+C E+ PVC +G TY+N C+ CA N L + Y G C
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSC 69
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 91 SCACYRNQRPVCGTDGK---TYNNECLLDCATRDDPGLRVRYQGPC 219
+C+C PVC +G TY+N+C+ CA + L + Y+G C
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSC 69
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 390 VDGPSKYPSCT--CTREMKPVCGSDGITYNNDC-LLNCATINDSRLG----IEYYGPCAD 548
+D + SCT C E PVC G T+ N C LN + ++L ++Y G C +
Sbjct: 112 MDSSQEKCSCTAPCPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE 171
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +3
Query: 336 NPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDC---LLNCAT-- 500
N L + YSG+C +++ C+ + VC S+G T+ + C + C
Sbjct: 158 NESLEVDYSGVCCEDM-----------CSAGQTSLTVCDSEGNTHTDICSFYIAKCRQMR 206
Query: 501 --INDSRLGIEYYGPCADK 551
I RL I GPC K
Sbjct: 207 RGIGKKRLQIAGVGPCKPK 225
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 351 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 506
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 351 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 506
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 351 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 506
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 82 YPPSCACYRNQRPVCG 129
Y PSCA Y RP CG
Sbjct: 32 YQPSCAAYSQPRPSCG 47
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 351 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 506
I + + A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAAILASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 477 RCCT*YRHCRRPASSRACTCTKGICWG 397
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 477 RCCT*YRHCRRPASSRACTCTKGICWG 397
RCCT CR +R CTC + C G
Sbjct: 97 RCCT---CCRTCCCTRCCTCCRPCCCG 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 477 RCCT*YRHCRRPASSRACTCTKGICWG 397
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 477 RCCT*YRHCRRPASSRACTCTKGICWG 397
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 477 RCCT*YRHCRRPASSRACTCTKGICWG 397
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 560 DYNLISARPVVFDAESGVIDCG 495
DY++I+ +PVV D SGVI G
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAG 23
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 124 CGTDGKTYNNECLLD-C-ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC 279
CG GK N +C+L+ C D G R G C + F H D N +C
Sbjct: 96 CGKHGKCVNGQCILNRCQGVSCDEGSMCR-DGKCEKVLETFCIGHADCGPNMLC 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,813
Number of Sequences: 27780
Number of extensions: 323488
Number of successful extensions: 792
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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