Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0378
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.006
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.84 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 100 CYRNQRPVCGTDGKTYNNECLL 165
           C R  RPVC ++GK Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131



 Score = 29.1 bits (62), Expect = 0.039
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 CTREMKPVCGSDGITYNNDCLLNCA 497
           C R  +PVC S+G  Y N C L+ A
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRA 134


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 489 NCATINDSRLGIEYYGPCADKVIVVDPGTQGDYHG 593
           N  TIN+S    E Y  C DK   ++   +G   G
Sbjct: 51  NSGTINESEFNDENYWQCNDKKTDIEETGRGKGRG 85


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 189 GIISGGTVEQALVVVCFPISSAHWSL 112
           GI SG +   +LVVV   IS+  W L
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWLL 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,635
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)