Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0378
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    36   0.031
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    34   0.071
At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    28   4.7  
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ...    28   6.2  
At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin ...    28   6.2  

>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 22/46 (47%), Positives = 24/46 (52%)
 Frame = +1

Query: 100 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVG 237
           C+R   PVCGTDG TY   C  D A     G RV  +G C  GN G
Sbjct: 48  CFRAD-PVCGTDGVTYWCGC-PDAACH---GARVVKKGACDTGNAG 88


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 76  LAYPPSCA--CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGN 231
           +A P SC   C+R   PVCG D  TY       CA     G+RV  QG C  GN
Sbjct: 65  IAKPASCPVQCFRPD-PVCGEDSVTY----WCGCADALCHGVRVVKQGACDVGN 113


>At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 257

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 520 PSLESLIVAQFKRQSLLYVIPSLPQTGFISRVHVHEGYLLGP 395
           PS+  +  +  K ++LL+ IP  P T F+SR   H+G   GP
Sbjct: 26  PSIHRISFSNLKPKTLLHPIPPKPFTVFVSR--FHDGRPRGP 65


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
           huntingtin interacting protein 1 [Homo sapiens]
           GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 360 SGLCADEVKIVDGPSKYPSCTCTREMKP-VCGSDGITYNND 479
           SG+  +   + D P ++ S   T+ +KP    SDGI+Y  D
Sbjct: 177 SGIDTESTFVNDAPEQFESLETTKHIKPDEVESDGISYRFD 217


>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 259

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 551 GYSRRPWDARGLPRNTTPVIELHTPLVQV 637
           G+S++P D++ +  NTTP++E  TP+  +
Sbjct: 199 GHSKKPEDSQVV--NTTPLVETATPIADI 225


>At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 260

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 551 GYSRRPWDARGLPRNTTPVIELHTPLVQV 637
           G+S++P D++ +  NTTP++E  TP+  +
Sbjct: 200 GHSKKPEDSQVV--NTTPLVETATPIADI 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,517
Number of Sequences: 28952
Number of extensions: 288552
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)