Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0377
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.5  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 397 VSEVTS*CCRPSLPGYAQRYLSNEIIKSDSFIETVL*YYR 278
           V+ VTS  C  +   Y+++   ++II S S   T   +YR
Sbjct: 212 VNGVTSEKCNLTFSWYSKKVFYSKIIISGSIFMTTTSFYR 251


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 151 YLLPQYGTW 177
           YL+P+ GTW
Sbjct: 129 YLIPEVGTW 137


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 151 YLLPQYGTW 177
           YL+P+ GTW
Sbjct: 129 YLIPEVGTW 137


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 502 YCTNIAFKSLYQFINLNTFS 443
           +C N  ++ LY++I L T S
Sbjct: 155 HCNNTTWRCLYRWIVLYTLS 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,599
Number of Sequences: 336
Number of extensions: 2766
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)