Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0377
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.3  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   9.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.3  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 421 NIYNSAHHVSEVTS*CCRP 365
           N+YN+  H++E+T  C +P
Sbjct: 189 NMYNTKGHIAEITDGCWQP 207


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 226 TSDNKHFIHHVFTCLTSTCRIEVASN 149
           T  N H +  +F  L  TCR   A N
Sbjct: 236 THVNNHLVRGIFAYLKQTCRYSAALN 261


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 80   SSRTCKQTDVSQPWQSRGVIISCITCYLNTARGSQ 184
            S   C++ D    W++   I+ C+ C  N   GS+
Sbjct: 917  SQTECQRLDA---WENENEILQCVCCRFNLIIGSE 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,210
Number of Sequences: 5004
Number of extensions: 44465
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)