Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0376
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 31 0.18
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 29 0.74
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca... 28 0.97
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 28 1.3
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 6.9
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 6.9
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 9.1
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.1
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 220 INSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKI 390
+N ++ +D W ++AG+ + P +VY + SSS GQK KS G+ I
Sbjct: 201 VNLQIGGSDQWGNITAGTDLVRRTHPNANVYALTTPLLTSSS---GQKLGKSAGNAI 254
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 0.74
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 166 DELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSS 345
DEL+ +S ++ +IN L + + + +SA S+ + YG T+H
Sbjct: 356 DELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKSQA-----AYGHGSVTYHEVP 410
Query: 346 DINGQKTDKSGGHKIINDDGKV 411
N T S G+ I + G++
Sbjct: 411 RYN--LTSASVGYSISSQRGRI 430
>SPBC336.13c |||mitochondrial inner membrane peptidase complex
catalytic subunit 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 280 SLKPIPGGHVYGESEYTFHS 339
SL P+P GHV+ E + FHS
Sbjct: 111 SLVPVPEGHVWVEGDEQFHS 130
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 160 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLK 288
IGD F + + H +IN+KL++++ K V SVKS+K
Sbjct: 281 IGDVCFSMPRKLNKDGAHRIINAKLSKDEDAKLVE--SVKSIK 321
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 199 WEKVHELINSKLNENDSWKP 258
W +V EL+NS+L + W P
Sbjct: 288 WGRVQELLNSQLQPAEIWLP 307
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 296 PEAMCTVNPSTHSIHRQTSTDRRPTKAEV 382
P TVN + IH TS+D + ++ EV
Sbjct: 1175 PSQQVTVNNTLQQIHVHTSSDGKSSETEV 1203
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 238 ENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIINDDG 405
END KP+++ K+ ++G + + +D++G ++ ++ IN DG
Sbjct: 309 ENDPTKPLTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEE--NEFINHDG 362
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 148 PSFPIGDELFDAASSGDWEKVHELINSKLNENDSWK 255
P + + FD + E++ EL+NS L+E + K
Sbjct: 544 PKYSSQETAFDTGAPISEEQIEELLNSGLDEQEGEK 579
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 353 LMSDDEWNVYSDSPYTWPPGIGFKLLTLP 267
++S ++W++Y+++ P I FKL+ +P
Sbjct: 450 VLSPEQWHLYANTVGFPIPSIEFKLVDIP 478
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.1
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 194 EIGKKFTN*LTVNSTRTIVGNQCQRAVSKA*SQYPEAMCTVNPSTHS---IHRQTSTDRR 364
E G +F T+ S T +G R VS + ++ + + HS I + R
Sbjct: 182 ECGARFPQ--TLKSPLTPIGGDSARTVSASTARTSDKFFPRHTRAHSDFWIPATSKPSRH 239
Query: 365 PTKAEVTKLSTMTEKSTSS 421
+ + + L+T+T+ S SS
Sbjct: 240 ASHSSIGDLTTITQSSISS 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,795
Number of Sequences: 5004
Number of extensions: 46110
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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