Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0376
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983...    32   0.44 
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    29   3.1  
10_06_0014 - 9605186-9607609                                           29   4.1  
06_03_0957 + 26307062-26308987                                         29   4.1  
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161...    28   5.4  
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629...    28   7.1  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    28   7.1  

>09_02_0487 +
           9828283-9829354,9830436-9830580,9830863-9831153,
           9831984-9832032
          Length = 518

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 172 LFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKP-IPGGHVYGESEYTFHSSSD 348
           L  +ASSGDW+ V+ L+N +    DS    S   +KSL+  IPG    G       +S+D
Sbjct: 66  LHASASSGDWKGVNFLLNREEAYADSSVQPSKKFLKSLEACIPGNCTNGRLPTPPQASND 125

Query: 349 I 351
           I
Sbjct: 126 I 126


>01_06_1129 + 34732007-34732091,34732814-34732934,34733012-34733083,
            34733168-34733242,34733348-34733419,34733514-34733675,
            34733780-34733854,34733932-34734003,34734089-34734160,
            34734245-34734313,34734388-34734462,34734557-34734628,
            34734732-34734866,34734946-34735415,34735490-34735648,
            34735741-34735880,34735974-34736193,34736305-34736540,
            34736627-34737130
          Length = 961

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
 Frame = +1

Query: 178  DAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPI---PGGHVYGESEYTFHSSSD 348
            D+A    + +  +L    + E+ + +P     VK L+ I    G  +   +  +      
Sbjct: 864  DSAKMVGFRRFVQLAMECVEESAADRPTMNDVVKELEIIIQNEGAQLLNSASLSAQQFGY 923

Query: 349  INGQKTDKSGGHKIINDDGKVYEFDFN 429
              G+  D  G H  INDD     FD+N
Sbjct: 924  AKGRDPDPYGDHVPINDDSSSSAFDYN 950


>10_06_0014 - 9605186-9607609
          Length = 807

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 166 DELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPG-GHVYGESEYTFHSS 342
           D LF  A  G W KV  L N +L    +    +AG       I G GH+   S  T+ SS
Sbjct: 157 DSLFADAKIG-WNKVTGL-NRRLVSRKNSIDQAAGLYSLEFDINGVGHLVWNSTVTYWSS 214

Query: 343 SDINGQ 360
            D NGQ
Sbjct: 215 GDWNGQ 220


>06_03_0957 + 26307062-26308987
          Length = 641

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 154 FPIGDELFDAASSGDWEKVHELINSKLNE 240
           F   D  FD ASS  WE  +E I  K NE
Sbjct: 539 FVFSDMEFDQASSRAWETDYEAITRKFNE 567


>05_07_0167 +
           28115290-28115349,28115952-28115996,28116087-28116179,
           28116259-28116342,28116949-28117131,28117234-28117276,
           28117671-28117891,28118060-28118137,28118404-28118529,
           28118616-28118825
          Length = 380

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 223 NSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIIND 399
           N KL E D    VS GS  S K +         +Y+   SSD+N  K  K+G  + ++D
Sbjct: 115 NKKLKEVDG-AAVSTGSGDSKKTMTSS-----GDYSAEGSSDVNDLKVGKTGRKRRLDD 167


>06_02_0131 +
           12161268-12161781,12162123-12162867,12162950-12162986,
           12163083-12163216,12163298-12163625
          Length = 585

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 157 PIGDELFDAASSGDWEKVHELI--NSKLNENDSWKPVS 264
           P GD LF+AA +GD  ++  L+   + +NE D W  V+
Sbjct: 39  PAGD-LFEAARAGDCARLALLLGGGANVNERDRWDSVA 75


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 353 LMSDDEWNVYS--DSPYTWPPGIGFKLLTLPADTG 255
           L ++DE   YS  D P T P  +G   L LP +TG
Sbjct: 22  LSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,744
Number of Sequences: 37544
Number of extensions: 274753
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)