Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0376
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               29   4.1  
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   7.2  
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   7.2  
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)               28   7.2  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 283 LKPIPGGHVYGESEYTFHSS--SDINGQKTDKSGGHKIINDDGKVYEFD-FNPKVKGY*V 453
           +KP PG ++Y + +Y    S   D+   K  K+     ++   K+ EFD FNP++ G+ V
Sbjct: 12  IKPQPGSNIYVKRQYATRLSLPQDVCAVKMPKNISTD-VSQGCKMAEFDPFNPEIMGH-V 69

Query: 454 HYTLK 468
           H   K
Sbjct: 70  HKPAK 74


>SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 162 DWKTWDRLNGNHDEHCYKNQLHNANANELKQSNK 61
           DWK    L  +H E  Y N++ +AN ++L+ SN+
Sbjct: 218 DWKLVTELAWSHGECRYCNRVISANVSDLRISNR 251


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 302  AMCTVNPSTHSIHRQTSTDRRPTKAEVTKLSTMTEKSTSS 421
            AM + N +TH  +R   T    T A+VTK +  T+ +T+S
Sbjct: 1901 AMMSTNVATHHANRYAVTYLGLTPADVTKATKRTQTTTAS 1940


>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 154 FP-IGDELFDAASSGDWEKVHELIN 225
           FP IGD LFD   +GDW+ V + ++
Sbjct: 480 FPAIGDTLFDIEKTGDWDLVKKQVS 504


>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 163 GDELFDAASSGDWEKVHELINSKLNEN 243
           G ELF+A  +GD  KV +L+ +  N N
Sbjct: 22  GRELFEACRNGDVSKVRKLVTNNSNVN 48


>SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 569

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 326 YSDSPYTWPPGIGFKL 279
           + D+P+ W PGIGF L
Sbjct: 233 FCDAPFDWIPGIGFSL 248


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
 Frame = +1

Query: 160  IGDELFDAAS-SGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYT-F 333
            +G+ +    S S  WE   ELIN  +  + S +  S    +  K +          Y  F
Sbjct: 1133 MGETITSGTSWSSSWESRGELINPSVLRHSSSRNYSIELSRDNKELEASQKVNNDHYALF 1192

Query: 334  HSSSDINGQKTDKSGGHKIINDDGKVYEFDFNPKVKGY*VHYTL 465
             +S  IN            IN+D     FD +PKV     HY L
Sbjct: 1193 DTSPKINNDHYALFDTSPKINNDHYAL-FDTSPKVNN--DHYAL 1233


>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 205  KVHELINSKLNENDSWKPVSAGSVKSLKPIPG---GHVYGESEY 327
            +V +  N+KL EN  W+P    +VK +  +PG   G V G S Y
Sbjct: 976  RVRKKHNTKLEENTRWRPEIMSTVK-VVIVPGNGLGDVEGSSWY 1018


>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 184 ASSGDWEKVHELINSKLNENDSWK 255
           A S  W ++H+L+ S LNE D+ K
Sbjct: 189 AGSNFWNQLHKLLKSHLNEKDADK 212


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 NDDGKVYEFDFNPKVK 441
           N DG  YE+DF PKVK
Sbjct: 730 NSDGLDYEYDFVPKVK 745


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,658
Number of Sequences: 59808
Number of extensions: 339917
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)