Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0376
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set (trithorax/...    31   0.52 
U41109-10|AAB37042.2|  169|Caenorhabditis elegans Hypothetical p...    31   0.91 
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    29   3.7  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    29   3.7  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical...    28   4.8  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    28   6.4  
Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical p...    27   8.4  
DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.      27   8.4  

>U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           b protein.
          Length = 739

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 202 EKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDIN 354
           ++V+  INS L  N S+   S G  +  KPIP  H     E+  H+ + ++
Sbjct: 55  QRVYRSINSTLYNNQSFASSSRGFYRKQKPIPKSHP-KHQEHHHHAKASVS 104


>U41109-10|AAB37042.2|  169|Caenorhabditis elegans Hypothetical
           protein F52E1.9 protein.
          Length = 169

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 187 SSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGG 303
           SSG+   +HE  + K   N SW P  A   + L P P G
Sbjct: 9   SSGNSTIIHEEFDEKPTSNFSWPPGQAFPFEPLPPYPAG 47


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 174 QLITDWKTWDRLNGNHDEHCYKNQLHNAN-ANELKQSNK 61
           +LI  WKT+   N  H+   YKN     N A  L++SNK
Sbjct: 104 KLINFWKTFSEANKEHEALFYKNLKQVMNIAKGLEESNK 142


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 169 ELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL 285
           ++  A  +G +E   E I  K +E D W PV+   V  L
Sbjct: 255 QMAQAGKTGTFENEKEAIAQKSSEKDGWHPVNVQYVADL 293


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 169 ELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL 285
           ++  A  +G +E   E I  K +E D W PV+   V  L
Sbjct: 255 QMAQAGKTGTFENEKEAIAQKSSEKDGWHPVNVQYVADL 293


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +2

Query: 128 WFPFKRSQVFQSVMSCLMLPLPEIGKKFTN*LTVNSTRTIVGNQCQRAVSKA*SQYPEAM 307
           WFP   +    +  SC+ +    +G  F   L    T     ++  + + K   +   + 
Sbjct: 149 WFPALAAAPSDADSSCVEMMDGLLGLIFALSLQKGQTNAYSCDESIQIICKYCPRETTST 208

Query: 308 CTVNPST--HSIHRQTSTDRRPTKAEVTKLSTMTEKSTSS 421
            TV P+T   +  + ++T   PT    TK  T T+ STS+
Sbjct: 209 TTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTST 248


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 320  PSTHSIHRQTSTDRRPTKAEVTKLSTMTEKSTSS 421
            PST  I  +TST +RPT   +T  +T T  ST S
Sbjct: 939  PSTSKIP-ETSTTQRPTSPILTSGATSTSSSTES 971


>AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical
           protein Y71A12B.15 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 229 KLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTF 333
           K  E D WKP +   VK L  +   H+  E+E  F
Sbjct: 658 KPEECDFWKPANEAIVKKLPDLLAAHITEETEVYF 692


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 221 LTVNSTRTIVGNQCQRAVSKA*SQYPEAMCTVNPSTHSIHRQTS-TDRRPTKAEVTKLST 397
           + +    T  G +  RA S          CT++ S  S+HR+TS  D     A++T    
Sbjct: 493 ILIQEATTPKGIKSHRAQSNLTHHLRHGRCTMDASAVSLHRRTSPPDFEKIHAKITDNFR 552

Query: 398 MTEKSTSSISI 430
            T    S++ I
Sbjct: 553 NTNSKPSTVPI 563


>Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 160 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHV 309
           I +   D     DW+ VHE I +   E ++  P  A   ++++  P G+V
Sbjct: 429 IDERALDGDDEDDWD-VHEFIRNVDGEEEALVPRIAKRTRTMRHQPDGYV 477


>Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 160 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHV 309
           I +   D     DW+ VHE I +   E ++  P  A   ++++  P G+V
Sbjct: 429 IDERALDGDDEDDWD-VHEFIRNVDGEEEALVPRIAKRTRTMRHQPDGYV 477


>DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 160 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHV 309
           I +   D     DW+ VHE I +   E ++  P  A   ++++  P G+V
Sbjct: 429 IDERALDGDDEDDWD-VHEFIRNVDGEEEALVPRIAKRTRTMRHQPDGYV 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,424
Number of Sequences: 27780
Number of extensions: 257798
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)