Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0376
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   7.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.9  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 484 VDCVGSEVSIKDIWD 528
           V C+  + S KD+WD
Sbjct: 77  VGCICRKTSFKDLWD 91


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 138 NGNHDEHCYKNQLHNANANELKQSNK*QKSWKTRI*L*HVPTSVP 4
           N N+ ++ Y N  +N N      +N  +K +   I +  +P  VP
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVP 369


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 AASSGDWEKVHELINSKLNENDSWKP 258
           + SSG  E  + L+ ++LN N S +P
Sbjct: 256 STSSGGNEDANLLLKARLNPNSSLQP 281


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 138 NGNHDEHCYKNQLHNANANELKQSNK*QKSWKTRI*L*HVPTSVP 4
           N N++ + Y N  +N N N     N  +K +   I +  +P  VP
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNY---NNYKKLYYNIINIEQIPVPVP 367


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 183 SIKQLITDWKTWDRLNGNHDEHCYKNQLH 97
           ++  LI + +     N N++++ YKNQ H
Sbjct: 407 NVNNLIKNTRCAKSNNQNNNQNKYKNQAH 435


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 332 SIHRQTSTDRRPTKAEV 382
           S+HR+  T  RP K +V
Sbjct: 136 SVHRRIHTKERPYKCDV 152


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 490 CVGSEVSIKDIWD 528
           C+  + S KD+WD
Sbjct: 79  CICRKTSFKDLWD 91


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 425 SILK*RAIKFIIH*SSHYSR 484
           +I+K R  KFI H S  YS+
Sbjct: 10  TIVKKRTKKFIRHQSDRYSK 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,419
Number of Sequences: 438
Number of extensions: 3315
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)