Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0376
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41150.2 68415.m05083 expressed protein an isoform contains a... 30 1.5
At2g41150.1 68415.m05082 expressed protein an isoform contains a... 30 1.5
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 29 3.4
At4g25390.2 68417.m03653 protein kinase family protein contains ... 28 4.5
At4g25390.1 68417.m03652 protein kinase family protein contains ... 28 4.5
At1g53320.1 68414.m06043 F-box family protein / tubby family pro... 28 4.5
At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containi... 28 5.9
At3g13060.2 68416.m01628 expressed protein contains Pfam profile... 28 5.9
At3g13060.1 68416.m01627 expressed protein contains Pfam profile... 28 5.9
At4g14040.1 68417.m02169 selenium-binding protein, putative cont... 27 7.8
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 27 7.8
At3g28690.1 68416.m03580 protein kinase, putative similar to pro... 27 7.8
>At2g41150.2 68415.m05083 expressed protein an isoform contains a GA
donor splice site supported by FL-cDNA alignment which
truncates the ORF.
Length = 401
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 196 DWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSD 348
D + + E I L+++++W + + S+K LK HVYG + + + SSD
Sbjct: 150 DIDLISEKIPVILDDSETWHIMLSTSMK-LKERGSAHVYGANRHELNDSSD 199
>At2g41150.1 68415.m05082 expressed protein an isoform contains a GA
donor splice site supported by FL-cDNA alignment which
truncates the ORF.
Length = 259
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 196 DWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSD 348
D + + E I L+++++W + + S+K LK HVYG + + + SSD
Sbjct: 153 DIDLISEKIPVILDDSETWHIMLSTSMK-LKERGSAHVYGANRHELNDSSD 202
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 235 NENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSS-SDINGQKTDKSGGHKIINDDGKV 411
+EN + PV AG P+ GG YG E+ H + GG + DD K+
Sbjct: 141 DENGRFPPVIAGGHSGEFPVGGG--YGNGEHGLHKRVHPYPSSEAGSEGGWRERMDDWKL 198
Query: 412 YEFDFNPK 435
+ P+
Sbjct: 199 QHGNLGPE 206
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 271 SVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIINDDGKVYE 417
S +S+ +PG T S S G+KTD+ GG ++ GK E
Sbjct: 293 SPESVAKVPGSVSASPEATTVVSVSPEMGEKTDEDGGSVVVMKKGKESE 341
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 271 SVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIINDDGKVYE 417
S +S+ +PG T S S G+KTD+ GG ++ GK E
Sbjct: 293 SPESVAKVPGSVSASPEATTVVSVSPEMGEKTDEDGGSVVVMKKGKESE 341
>At1g53320.1 68414.m06043 F-box family protein / tubby family
protein (TULP7) similar to Tubby related protein 2
(Tubby-like protein 2) (P4-6 protein) (Fragment)
(SP:P46686) [Mus musculus]; similar to phosphodiesterase
(GI:467578) [Mus musculus]; similar to Tubby protein
homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans]
contains Pfam profile: PF01167: Tub family; contains
Pfam PF00646: F-box domain
Length = 379
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 317 NPSTHSIHRQTSTDRRPTKAEVTKLSTMTEKSTSSISILK*RAIKFIIH 463
+PS S S+D++P +VTK+ K SS++ILK +A ++ H
Sbjct: 253 SPSPSSSSAGLSSDQKP--CDVTKIMKKPNKDGSSLTILKNKAPRWHEH 299
>At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 336
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 172 LFDAASSGDWEKVHELINSKL 234
+F A SSGD+E V L+NS++
Sbjct: 49 IFKAGSSGDFEAVRRLLNSRV 69
>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 634
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 154 FPIGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL-KPIPGGHVYGESEYT 330
FP + FD DW K ++ + + + P GS S + IP G S Y
Sbjct: 220 FPEWQQGFDGGIWSDWSKPSDMHRHSSSISPALSPQPLGSYGSYGQNIPMGSQRQRSFYG 279
Query: 331 FHSSSDINGQKTDKSGG 381
F S S+ + SGG
Sbjct: 280 FGSGSNSYNRGYMHSGG 296
>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 551
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 154 FPIGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL-KPIPGGHVYGESEYT 330
FP + FD DW K ++ + + + P GS S + IP G S Y
Sbjct: 220 FPEWQQGFDGGIWSDWSKPSDMHRHSSSISPALSPQPLGSYGSYGQNIPMGSQRQRSFYG 279
Query: 331 FHSSSDINGQKTDKSGG 381
F S S+ + SGG
Sbjct: 280 FGSGSNSYNRGYMHSGG 296
>At4g14040.1 68417.m02169 selenium-binding protein, putative
contains Pfam profile PF05694: 56kDa selenium binding
protein (SBP56); similar to Putative selenium-binding
protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
similar to selenium binding protein (GI:15485232)
[Arabidopsis thaliana]
Length = 487
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 355 GQKTDKSGGHKIINDDGKVYEFDFNPKVKG 444
G K +K + +DG Y+FD P++KG
Sbjct: 367 GGLLQKGSPYKAVGEDGNTYQFDV-PQIKG 395
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 329 VYSDSPYTWPPGIGFKLLTLPADT 258
V +++P + P G+ F+L TLP DT
Sbjct: 113 VPTEAPVSLPKGVRFELNTLPVDT 136
>At3g28690.1 68416.m03580 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 376
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 202 EKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDI--NGQKTDKS 375
+K ++ LN + +P + V++LKP+P + S +F + + NG +T
Sbjct: 279 QKATQVAAQCLNRDSKARPKMSEVVEALKPLPNLKDFASSSSSFQTMQPVAKNGVRTQGG 338
Query: 376 G 378
G
Sbjct: 339 G 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,649
Number of Sequences: 28952
Number of extensions: 236062
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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