Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0374
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.88 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.88 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 300  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 196
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 300  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 196
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 440 KACIAPKSICIFPNSKLKRRRISKM 514
           +AC++P+   +  NS+  R R  KM
Sbjct: 15  EACVSPEGSLLPSNSREMRNRAEKM 39


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 508  KDVLSNMNVNKIFNND 555
            KDV  N +VNK F  D
Sbjct: 1517 KDVFENGHVNKAFEED 1532


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 508  KDVLSNMNVNKIFNND 555
            KDV  N +VNK F  D
Sbjct: 1517 KDVFENGHVNKAFEED 1532


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 508  KDVLSNMNVNKIFNND 555
            KDV  N +VNK F  D
Sbjct: 1517 KDVFENGHVNKAFEED 1532


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 508  KDVLSNMNVNKIFNND 555
            KDV  N +VNK F  D
Sbjct: 1517 KDVFENGHVNKAFEED 1532


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,823
Number of Sequences: 336
Number of extensions: 2551
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)