Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0374
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   2.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.9  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   6.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.5  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   6.5  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   8.6  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 370 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 546
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 547 N---NDAQITRLLK 579
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = +1

Query: 238  DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 414
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 415  -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 555
                          K+LE  +Q +++   +L++   K+  +  +++  S+    K+    
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 556  AQITRLLKGESLSVSEAI 609
             +I+  LK E++S S+AI
Sbjct: 955  EEISN-LKEENMSQSQAI 971


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 154 VNAIYFKGAWSSKIDERLTSDRDFYVSKDKTI 249
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 43  NTVAAKSINDWVEENTNNRIKDLVNPDSLS 132
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 416 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 517
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 523 NMNVNKIFNNDAQITRLLKGESLSVS 600
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
 Frame = +1

Query: 292 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 441
           E  A  + L+ I + GD   ++        V LPKDK G+   +EAL    T  E A  Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572

Query: 442 SMYSTEVDLYLPKF 483
            +    +DL L  F
Sbjct: 573 GVGKLNLDLDLGLF 586


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 431 RLSKACIAPKSICIFPNSKLKRRRISKMF 517
           RLS  C   K    F     KR+R+SK F
Sbjct: 352 RLSDVCFEEKVYTDFSKKGSKRKRVSKKF 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,251
Number of Sequences: 5004
Number of extensions: 44006
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)